Array 1 27935-29609 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJVB01000002.1 Gardnerella swidsinskii strain GS 9838-1 NODE_2_length_432172_cov_307.558222, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27935 28 100.0 33 ............................ TAGTAGTGTCTGCGTATTCCTCACCTAAAGACA 27996 28 100.0 33 ............................ CATCATCTTCATAACTATGTGCTTTAATCCAAG 28057 28 100.0 33 ............................ CTTCCGCGTCAATATTTGTTTGCAATTGTTTAT 28118 28 100.0 33 ............................ TCACGCGTTGTAAGTAAAGCAACTGCGTTAGGA 28179 28 100.0 33 ............................ TTTGAGAAGACATGACAATGTGCATACGATTTT 28240 28 100.0 33 ............................ TGTACGACACGCTGCAAACTATCTCACGAAATG 28301 28 100.0 33 ............................ GCAAGAGGGCGCTTACGTCGCGCGCAAGAAATA 28362 28 100.0 33 ............................ TCTCCAAAACCCAAGATGCAGCCAAATTAATAA 28423 28 100.0 33 ............................ CTCATCTGATAATAGCATAAAAATTTTGGAAGG 28484 28 100.0 33 ............................ CGATGATGTGAAAGAGTTATTGCCAAAGCTTGC 28545 28 100.0 33 ............................ CAGTTGCATGATAAGCTTGGGCATTTAACTCAG 28606 28 100.0 33 ............................ CTTATGAAGCAGATGTGGTTTCGCTTGGTAAAA 28667 28 100.0 33 ............................ CGTTTTAGCACTAGTATTCAAAGCCAGCTTAAA 28728 28 100.0 33 ............................ GCAAGTCAAAGAGATTGTAAGCTGTCGCAGCTT 28789 28 100.0 33 ............................ CATCAACGATAGCGCGAGAACGAGCTACGATAA 28850 28 100.0 33 ............................ TGTACTTTGTTTTGTTTTCTGCATTTCCGTAAG 28911 28 100.0 33 ............................ TAGATCTATAAAAGAGTTCAGCTTTTCCCTGCC 28972 28 100.0 33 ............................ TAGATCTATAAAAGAGTTCAGCTTTTCCCTGCC 29033 28 100.0 33 ............................ TTGAGGTTTTGACAGCTTATCTAAACATTCTTT 29094 28 100.0 33 ............................ CTATTGCCTTGTAAGAAATCCGCAAAAGAGGAT 29155 28 100.0 33 ............................ ACCAACTTATTGACATTCAAGTAAAAATAAATG 29216 28 100.0 33 ............................ CGACTTGCGTGTCTGCGAATGTAGTAGGGTCAA 29277 28 100.0 33 ............................ GCAAACATTGACGCAGAAATTGCAAACCGTGGT 29338 28 100.0 33 ............................ TTCTATCAAAATAATCACCGTCGTGAATACTTT 29399 28 100.0 33 ............................ CAAACGCGGACGCGCTATTTTCAGCAAGGCGCG 29460 28 100.0 33 ............................ TCTGCTCAGCAGTTGCGCGTACCGCTTCAGCCG 29521 28 96.4 33 .......................A.... CTTAAAATCCGTCGGCTTTTTAACGATAATTTT 29582 28 78.6 0 .........A.......T.AT.CT.... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.1 33 GTCTTTCCCGCATACGCGGGGGTGATCC # Left flank : TTTATTCCTAATGAAATTATTGAGCTAACTGGTATTACATCCAACATGCTTGAATCTTATGGTGTCAGATTAGATTTAGCATTAAAAGAATTTATTGATTTTGTCGAAAGATTACCTGTACTTGGATATAACGTACAATTTGATATGTCATTTTTAAATTCTGCTTTATCTTCATTAGATGAAAGATTTGATCATTCTCTTTCAATTAACAAAATTTTTGATATTTCTCGTTTTGTAAAGAAAGAAAAGAAATTTTTAAAAAACTACCAATTAAAAACAGTGCTGCACGAATACAACATTGCTGAATCTGTTCCACATAGAGCTCTTCTGGATGCTAGACTAACAGCGCATCTTGTTTTTAATTTGAAAGGATTGCTAAAATTTATTTCATAAAAATAAAATACTGTTGTGCCATGCTCTGTGATAGGCTGAATCTGAAAAGTAAATGAAATTTGACTGTTTCTGTTATAGAAATGGTAATTTTATTGGGATCTTTAAGT # Right flank : CTGGAAGTGCGTTTATCAAAAAGAAAGAGCTTAGCGTGTTGTTACTGCATAAATGATGTGGAAGATAAGAGAGGTGTGAAAAGCTAATGGATATGATGAAACTTTGTTATGACATGGCTGAAAAACTTCGTCCCTATGCTGAGCCATATATGAGTGAATTTTCCAAAGAATTTGCTAATGATGCTATTGGCGCAGGCGAACCGTCAGTTGCGATTGATATTTATTTAGTAGACGCATGGTTACACAAGAGCGCACCTAAAGAGCTGCTAATAGAAGCTTACAATTTATTAGACCCTTATGAATGCGGCGATGACTATGACGATATAGCAGACGATTTAGGAGTCCCTCGTAAAGTCCATTCACCAGATGAATAAATAAATTTTGAACTATAACTACACTTTTTTGGCATATAACCCAAAGAGCTGGTCATTCCCCCAAACCTACCCCGTGAAGGGTCAATGGTAAGGGGGATCCACAGCTCTATATTTGATTTTATCATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 330339-329854 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJVB01000002.1 Gardnerella swidsinskii strain GS 9838-1 NODE_2_length_432172_cov_307.558222, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 330338 36 100.0 28 .................................... TATTAATATTGCTGTTCGTCTTCCTAAA 330274 36 100.0 28 .................................... ATGAGTGAGTACGATTTTAGAGCTAAGA 330210 36 100.0 28 .................................... CATCTGCTGGGATGGCGACGGTAAAAAC 330146 36 100.0 28 .................................... TGACATATCATGGTATCAGCGCGGCATT 330082 36 100.0 28 .................................... ATAAATAACGGTGTTAAAAATGGTAAAA 330018 36 100.0 29 .................................... CCTATGAGTCGTAAAATGCAACGACGGAA 329953 36 100.0 28 .................................... TTGAAGCATCCGGAGAGTGTAGTCGATG 329889 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 8 36 100.0 28 CAATTATATCAAGAATGGTAGAAGCTAATTTTCAAC # Left flank : TAATGGTTCTGGACATACGATTCCTAGTGCCTTATCTGATTTAGCTCAATCATATGGTATTTATGTGGAAAAAGGCGTGGAAGAATTTCAAGTACCACAATTCGTAAGGAGTGGATTATGAAAGTCGATGAGGACAGTGGTGGCATGTGGTGTTTAGTAATGTTTGATTTACCAGTGAAAACAAAAGTGGAGCGTCATGCTGCAACTGTATTTCGCAATATGCTGCTTGATATGGGATATGCAATGGTGCAATTTTCTGTATATGTTCGTTATAGTCCCACTCAAACAGGAAATAGAACTTCAGTAAAAATAATTAAGGATAATCTTCCGCCGCGTGGATCTATACGCATTTTACATGTCAGTGATCATCAATGGTCATCTGCGCAACGTTATTACAATGCCAGGCAAGAAAAGAAAGAAGAAACCCCAGATATCGCTATGCTTTTTTAATCGTAAAAAGCTTTATAATAGTTGAAATTCTACCATTCTTGACGATATAC # Right flank : TAATAAATAAAAACGGGGAAGCTGGAAAGCTTCCCCTGCAGTGATAATCATCAAAACTGCTGAGCAATCAAACTGGATAACAAGTCCAGTCTTATTGAAAATTAGCATTTCTAATATATCATTTTTAAGAAATAGAAAACAAGTGATTTTTTTAAGTTTTGTTAAAAGATTTGAAAAAGTAATATATTGATATAATTAGTGGGTAGCGTAGTTGAAAATATTTTCACTTTACGTATGTGTGCGTTTTCTAAAAAATGTCTTCTAGGAATGTATGTGTAGGATTATAGGCTCAAAAGTGTGTAAAGCTAAGCTGATGAATATTCTGTGCATAAACCATAGCTTCAGCACCGTTACTAACTCAGTTATCTAACTGAGAAAGTAACGGTAATCACCCAAACACTGTTACTAACTCAGTCAGCAGGCTGAGAAAACAACGGTCATGCGTTACTAGTGCAGTAAGTAGACTGCGTTAATAACGAATAAGCGGGGTTATACGTTAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAATTATATCAAGAATGGTAGAAGCTAATTTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //