Array 1 59311-58061 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJVAA010000019.1 Escherichia coli strain ROAR-023 / O162:H42 / fimH370-like / 2716 (ST Warwick) isolate Faeces, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 59310 29 100.0 32 ............................. TTGGCCGAGGGCGAGTATTCGACCAATGAGGC 59249 29 100.0 32 ............................. TTGAATCTATCAATAATGATTTGCAACAGGAA 59188 29 100.0 32 ............................. GCACAAGTGACTACATCAAGGATGGGGAATGG 59127 29 100.0 32 ............................. GTTTTTGCCGCTGCCAGATTGCCGAATATAAC 59066 29 100.0 32 ............................. AGGCGGAAGAAACTTTTGATGTCTGGACCCGA 59005 29 100.0 32 ............................. CGTTTTGTACGCCGGGGCGGACGGATCATTCA 58944 29 100.0 32 ............................. TCTTAACTCCATTGCTGAGTCGATTGTGAATT 58883 29 100.0 32 ............................. GTCACGACCGAAAAAAAACGCGTAACGCGCGC 58822 29 100.0 32 ............................. TTTTGCATAACTCATTTGGGGTAATTATGAAA 58761 29 100.0 32 ............................. CCGTTTGCAACCCCCGAGTGGTGCAAAGACGC 58700 29 100.0 33 ............................. TCGACGCGGAGCCGGGCGAGTTCCAGATATTGC 58638 29 100.0 32 ............................. GCTGTCCAGCCTGCGCGCTGGCAAAGGCGCGC 58577 29 100.0 32 ............................. AGGTAATCCTCCGCAATGCGCGTCGCATGTGG 58516 29 100.0 32 ............................. CGCGGGTGGGTGGCGATGCGCGGGTATATGGC 58455 29 100.0 32 ............................. CCACGAAAGAAGATGCGGTTTGCATATGAACT 58394 29 100.0 32 ............................. AAAACGCAATGAATGGTGACTATGGGGAAATA 58333 29 100.0 32 ............................. GCTGAGGAAATCGCAAAACCCTCGCAAGATCC 58272 29 100.0 32 ............................. ATGTTGACGCTCGAGCGCGACGGTAAAACAAT 58211 29 100.0 32 ............................. CGTATTGCAGTGACTATCCCTAAAAACCTGCA 58150 29 100.0 32 ............................. TCAGCAACAATTATTTTCGTCGCATCGTCATA 58089 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTGGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 74663-74266 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJVAA010000019.1 Escherichia coli strain ROAR-023 / O162:H42 / fimH370-like / 2716 (ST Warwick) isolate Faeces, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 74662 29 100.0 32 ............................. CAGTGTTTCCCGATGCCGGAGACATTTCACGA 74601 29 100.0 32 ............................. CAGTGTGTACAGCGGCTGGCAACGGCTGACGC 74540 29 100.0 32 ............................. GCAGGTTACGCGCCAGTTTGCTACCGGATTTT 74479 29 100.0 33 ............................. TCAATCTATAGCGTCAGTAAATGGAATTAAGGC 74417 29 100.0 32 ............................. GCCCTTTTGCGTGGCACGCCCCAGGAACGCGC 74356 29 96.6 32 ..................A.......... TTATCGGTCATCAACTATAGCGCGTATTTACT 74295 29 75.9 0 ...........T...A.ACAA....G... | C [74286] ========== ====== ====== ====== ============================= ================================= ================== 7 29 96.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACTTGCATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTTAATATTTATAAGCGTTATAAATGGGTGGAACCTATAAAGAATTCCACTCATTTGTATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCCGGACTAATCATTGTCATACTCTACAAATTCCGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTAGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGT # Right flank : ATAATATCGGCTATACCAACCTAATATTATCAAATGTTAAAGGTTCTAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATCTCTCCTGAATGGCGTGAGTCAAAATATTGCATTTTTATCAAATGTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAGCATGAAATATATGAGTTGGTGAGTTATAAAGATTATCTATACTCAACAGCCCATGAACTTGTTGATTTTCAAGATGGTGTATTACGATTTCAACAAATTAGAACAAAATACAGGCAAGAGCTAAAAGAACTCGGTTATCTTGTAGGTAATTAAGAAATATTGTCTTTATGGTAGGAAAACGCAATTTTTCATATTATAAATATGAGATTAAAACAATAATTTAATATCATGCTTTTATTTTAATCTCGAAAATGCCTAATTTCATTAAATACGCTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATTA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //