Array 1 93153-96194 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050018.1 Haloarcula sp. JP-L23 plasmid unnamed4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 93153 30 100.0 36 .............................. GCGGCACTCGGAGCGGTCGCGGCCGACTACCTCAAC 93219 30 100.0 34 .............................. CAGTAGTAGGTGTTCGTGGCGTTCGTGTCGAACG 93283 30 100.0 36 .............................. CGATTACAACAATCTATCCTCGAGTCCTTATTGTCG 93349 30 100.0 35 .............................. GCCACAACACCTATCGGATGATCGTAGCCACAATC 93414 30 100.0 36 .............................. GATTTCGTCCTGCCGGCGGGTGAGCGAGACGGATTG 93480 30 100.0 35 .............................. AATCTCTCGTGCCATGTTAGTACAATAACCCCCCA 93545 30 100.0 36 .............................. CAGTTCTGTTTGACAAGGCGCTTTCCGAGTTTCTTA 93611 30 100.0 34 .............................. GGGTGTCGCTACTGCAAAGACGATGATTCAAAAG 93675 30 100.0 36 .............................. GGGAACCGGTCGACAAGCTCGGGGAAAGCGAGGACC 93741 30 100.0 34 .............................. CCGACTCGCTCTTGTCGGGATGGATGACCCACCG 93805 30 100.0 35 .............................. CTCGGTCCGGCAGTCGTCCGCGCCGTCGTCGTAGA 93870 30 100.0 34 .............................. CCGTAGAAGACCATCTCGGCCTCCTCCGTGGCGT 93934 30 100.0 35 .............................. TCGACTTCGACGTCGACGACTTGACCGGCGTACTC 93999 30 100.0 37 .............................. CCGAGGACGAACAGCACCGCGACAAGGCCCAGCTCGG 94066 30 100.0 35 .............................. CCCGACATCGAAGTTCTTGCAGTGTTTGTGACCGC 94131 30 100.0 35 .............................. TGATACTGTTCCGCAATCTCCTCCGGAACGGGCTG 94196 30 100.0 37 .............................. TGCCATTGTTATATTTGCAAGTCAGTTTCTAACGCTG 94263 30 100.0 36 .............................. GGCGGTACGTCTCTGTACTCTTTGACCAACTTGTCG 94329 30 100.0 43 .............................. ACCAGCTTTGGGCCATAGACTGTTTTCGCAAACGAGTTACAGA 94402 30 100.0 36 .............................. ATTTGGCTTGTAACGGATTGTGACCGTGTAGAAATC 94468 30 100.0 36 .............................. TTGAGGTACGCCGTCTTTCGCCAGTCTTGTTCTGTC 94534 30 100.0 35 .............................. ATCTAGCTCATCCCCATCAAAGAAGCGTCTGGCTG 94599 30 100.0 35 .............................. GCGACGGCGTGAGGGCCATCGACTCAAGCCTCCGG 94664 30 100.0 33 .............................. AGGTCATGAGTACCGTCATCGATACAACCGCGC 94727 30 100.0 36 .............................. GTCACTCATCGGCACCGCCCCCACCGAGGTGTGAAA 94793 30 100.0 37 .............................. AATCTCTGCAAAGCTCTCTTGCTCATTCTGAATGGCC 94860 30 100.0 36 .............................. CAGCGCAAAGCCGGCCGCGCCGCCCCGACAAACTTC 94926 30 100.0 34 .............................. TTGCTTGATGTGGGTGTGCAGCCGGGCCACGTTG 94990 30 100.0 35 .............................. CTTAAGCTGGACTTTGCGCTGGTCCACGAACGTCG 95055 30 100.0 36 .............................. AAGACGGCGGTATTGGACCGAGTCACATCGAAATCG 95121 30 100.0 37 .............................. GGTCAACTACCCACACCCCCGATGTTGCATCATGAGC 95188 30 100.0 34 .............................. AGCTGGTCGGACTGGCCGAGGATCTCGTCCGACA 95252 30 100.0 36 .............................. AAGGCTAGACAACTCATTCTCGAAGTTGTCCATCGA 95318 30 100.0 37 .............................. GGTCAACTACCCACACCCCCGATGTTGCATCATGAGC 95385 30 100.0 35 .............................. AACCGGTCGTCGTCCGGGATTTCGTCCATTGTCTC 95450 30 100.0 33 .............................. TGGTAGATGTCGTCAGTCTTCTTCCGCGTCCCG 95513 30 100.0 33 .............................. ATGCCCGACTCGGAGGACGCTATCGACAAGGGT 95576 30 100.0 36 .............................. GACCTCATCTGCGCCCAGACCGGTCGGCAACTCCAG 95642 30 100.0 36 .............................. CTGGTACAATGGGCCGCACGTACGAGGACATTGAGT 95708 30 100.0 36 .............................. ATCCCGATTGTCGAACGGAAGGCCACGAACAAGCGA 95774 30 100.0 37 .............................. CGACGAAAAGGAGGACAGTTCGTAATGGCCGACACTA 95841 30 100.0 34 .............................. TCGTCAACGTCGCCACGGACTTCAACGTGGTCTG 95905 30 100.0 36 .............................. ATCGGCTTCAACGGTGGCGGCGGCAACCTGATGAAC 95971 30 100.0 34 .............................. TCTCCCTCCGACCGTCGTGGCCAGTGGGTCGCCG 96035 30 96.7 35 ................T............. AGCATCTCCTCGTTGAGCCGGCGAATCTCCTGTTT 96100 30 86.7 35 .............T....T..A......A. TCGCTGGACAGGACACCACCCAACCATCTATTTGG 96165 30 80.0 0 .............TTC...A.T....T... | ========== ====== ====== ====== ============================== =========================================== ================== 47 30 99.2 36 GTTACAGACGGACCCTCGGGCGGTTGAAGC # Left flank : GACTTGCTCCGGCGCCACGAGCCAGAACTGTTCAATCTACTGCACGAGCAGGTTTGCGAGAAAGTCTACGACCAACGTATCGCAGAGCTTGAGGCACGAATCGACGAATTGGAGGGGCGGCTGGATGAGGGATGAGCGACGCGATTACGGCGAGAGGTCACCAAACTTCGCGAGCAGATAGATGACGACTGACTACTCGTTCTCGAACACCTCGGCCGCGACATCGGCGAACTCGCTGGTCCACTCGGTGTAGTGGGCGATGTCGCCGACGTGGTAGCGCAGGCGCCACTGCCGGTCGCCGACCGACGTCTCGAGGAGCGGTCTGATCCTTCAGCCGACGCCGTCGCAAGCCGAGTTTCAGCACGTGACAGCGACGATGTAAGTCAGTAGGACGCAGTGTTTTCGTCGACCCCCCGGGGGTAAAGGGGATATTGGAGGTCGACGAAAACGATTTAGTGAGAACAGGCTATAGCTGGGCTATGGCCCGTGATTGGGGCATG # Right flank : CCATCTCTTGTCGATCCGCAAAGCTACCTTCTGAGCCAATACCATCAATCCTCAAGCGTCCAAATCCAGCGATAGCTCTACTTACACTCCGCTACCCTGACCCTTTTGTGTTGGCCGGGAAATGAGTCTGTCGTGACGTATCAACTAAGTACAAGCGGGGTGGGCTGACCGGTGCGGATACTCACACGTCTACAAGCTCGCGCCGACGCCGCCTACGACAACACCTATCATCACAAACTCCGGGGGCGGTTTTGGCAAGCCCTCGAAGGCAGTACGTACGACGGTCTCCACGACGCGAACCAACCCAAGCCGTTCGCATACAGTAACCCGTTCCCGCCAGGCGACATGGAGGAGGGTGACGAGCGAAGCCTCCTCGTCGCCTCCACCGATGAATCCCTCCTCGCCCATATCGCCGAGGACCTCACGCATGACCGGGAACTGAACATCGGCGAGATGCCGTTCCACGTCGACGAGGTCACACCGCTGTCGCCCGACGTCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGGACCCTCGGGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.40,-2.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 105739-107991 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050018.1 Haloarcula sp. JP-L23 plasmid unnamed4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 105739 30 100.0 35 .............................. ACGAGGACGAGGTCGCCGCTCGTCAGTCGGTCCTC 105804 30 100.0 34 .............................. CGGTCCATACCGGCAGTAAGGGGCGGTTACGGCA 105868 30 100.0 36 .............................. GGTATCTTGCTGGCGAGTCCCGCCGCCGCACCCCCG 105934 30 100.0 35 .............................. CGCCGACTCTTTGGGCCAGAGCGAGTGTAGGTCCA 105999 30 100.0 34 .............................. GGGGGCAACGCGACGATGGACACCTTCGACGCCA 106063 30 100.0 35 .............................. AACGACGACACGCCCCCACAGTGGGGAGGGTCCGA 106128 30 100.0 35 .............................. CGGAAGCGTGGTCGTCGAGAGTGTTAACCAACATC 106193 30 100.0 35 .............................. AAGCACGGGCTCTACAGCGACGTCATCCGGGAGGA 106258 30 100.0 35 .............................. GATGAATCCGGGACCGATGCCCCTGTCCACGACTC 106323 30 100.0 35 .............................. CTCGAGACGAAGCGCGCCGAGTTGCAGGAGCGCTA 106388 30 100.0 37 .............................. GAACAGACTGAGGACGGCGACCTGCCCCAGCCGACGA 106455 30 100.0 36 .............................. ACCGCTTGATGGGTTCGACGTAGTCCACCTTGACAC 106521 30 100.0 36 .............................. TTACAGAGTGCCGTGAGGTTCATCGGGTGGTTATTC 106587 30 100.0 35 .............................. GCCTCCATCTCCGAGGTGTCCACCTGTCGCGCCCG 106652 30 100.0 35 .............................. GATCGGACGCTATCACGTCGAGCGAGAACACACCC 106717 30 100.0 35 .............................. GTTCTCTAATCGGGACTTGTACAACTGCGTTGCTG 106782 30 100.0 36 .............................. AGCGACTGACCGTCGCCGACCTGTTCTTCTTCCAGC 106848 30 100.0 33 .............................. GTGCCCTGGCCCGCCGGCGCGTCGGGACTGCTG 106911 30 100.0 34 .............................. GGCCTCCTGTGGGCGGTGATACGATGAGCTTCGT 106975 30 100.0 36 .............................. ATCCACCGCTACCTGACCGAACGCAAGCGACTCGAA 107041 30 100.0 35 .............................. TGGCAGGCCCTCGCCGCCAGCGACGTCGACACTGA 107106 30 100.0 36 .............................. AACGTCGATACGGACGTGCAAGCGCCGGACGTGCAG 107172 30 100.0 35 .............................. GACTGATGCTTTACTTTGTCAAACACGGCTACCAG 107237 30 100.0 36 .............................. AGTGGTGCCGAAACTGCCCAGCTCTCGGTTACGAAC 107303 30 100.0 36 .............................. CCGATGAACGGCGACCACGACCAGTACATCAAGACT 107369 30 100.0 36 .............................. CCGTTGGTGGCTACGGTCGCTCGAACGTTGCTGAGA 107435 30 100.0 36 .............................. GCGAAGTCAAAGAGCTCGTGCGCGTCTTCGACGAGG 107501 30 100.0 37 .............................. GGATGATGGCGTCACGTACCTGTTCCCAGAAGAGGGG 107568 30 100.0 36 .............................. TTTCGACGATGTGATTGACCAGTTGCTGGATATAGC 107634 30 100.0 37 .............................. CTCTATCTTCGTCATGCTGTACCTCCGCTATACGCGT 107701 30 100.0 36 .............................. AGCAGGAACTTCAGAAGCGAGTCGAGGCCGCCGCCG 107767 30 100.0 35 .............................. GTCTACAAGGCGCTGCGGGACGTCGACGTCGTCGA 107832 30 96.7 36 ............................A. ATCGCCGAGGGGCAACAGCAGCAGGCCGCCGAGCGC 107898 30 100.0 34 .............................. CTGGCACCCGTCACCGGCCGGCCGGAGATCCTGG 107962 30 90.0 0 .........A.............A....C. | ========== ====== ====== ====== ============================== ===================================== ================== 35 30 99.6 35 GTTTCAGACGGACCCTCGTGGGGTTGAAGC # Left flank : ATCAGACCGTCGATCATCCGAGACTGAATAGGAAGGTGAGTTACCAGTACTTGCTCCGGGTCGAGGTGTACAAACTAAAAAAGCACCTGCTCACCGGTGAGGAGTACGTCCCGTTCAAGCGGTGGTGGTAACCGTGGTGTACGCCATCATCGTCTACGACGTACAGGCCGACCGGACCCCGAAATTTCTCAAATATCTCCGGCGGTATCTCACGCACGTACAGAACTCGGTGTTCGAAGGCGAACTCACCGAGGGGACGCTCGTCGAAGTCAAAGAGACACTCCAATCGATGCTCGAAGAGGGGGAGTCCGTGATGGTGTATCGGATGGACTCGGAGAGTTACGTCGAGCGATCCGTGTACGGTGACGATCCAATGGACGACCAACAGTTTCTCTAGGTATTTTCGTCGACCCCCAGGGGTTCAGGGGGTATTGACGGTCGACGAAAATAGTGAAGTGAATTCGGTTGCAACAGCCGCTATGGCCCGCAAATCGGCCATG # Right flank : CATCTCCAGCGCGGAGACCTGCTGATGAAGCTCGGACTAATCGAGAAGGTTAACGATGGCTTTTTCGAACTCGTTAGATGGCGCGAGGAACACGTCGACAACGACTGACCTATTCCCGCTCGAACGCCTCACTCGACACCTCGGCCAGTTCACTCGCTTCGATGTGGCTGTACATCTCGCTCGTCGTCGACGGGTCTTCGTGCCGGAGTGCCCGCTGGGCGGCTTCGAACCCGACGTTCCGGTAGAGGAACTCGCCGACGCCGCGCCGCGCGCCGTGGGGAGTGAGGTAGTCCTTGGGCCCGTCGACGTCGATATTGCCATCCTCACAGAGTCGTTTGAGGATGGAACGGACGCCGTTGACCGAGATGGACGGCGGCCGAGCGTCGTGGTCGCGCAGCGCGTCGAGCAGATCGTCGCCGGGCTCGGCGTCGTCGGGGAACTGGCTATGCAGCGACGGCGCGTGCAGCGTCGGGAAGACGGGCCACGAGTCGGCAGGCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //