Array 1 435-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVSL01000041.1 Haemophilus parainfluenzae strain 146_HPAR 284_142380_5348199_42_,...,233+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 434 36 91.7 30 .GGA................................ CCTCGGCTAAGAACACACCATCCAAACCGT 368 36 100.0 30 .................................... ATGTCGCTGTAAAGGCATTCCATTTGTTTG 302 36 100.0 30 .................................... GCAAGGCAAGGTGATATTCCCCGCAGTCGA 236 36 100.0 30 .................................... CCGCTAATTGACGTATCAGCATTGATTTTT 170 36 100.0 30 .................................... TTCTAATACCCATTTTCCGTATCGGTGAGC 104 36 100.0 30 .................................... ACGCCTAATTGTTGACGGTCGAAGATTTGA 38 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.8 30 GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Left flank : TTTGACTTAATGCAAGAAACCTTGCGCATCACGAATCTAGGCAGTTTAAAAGCCGGGGATTTTGTGAATATCGAACGTGCAATGCAAATGGGCGCCGAAATTGGTGGGCATATTTTATCTGGTCACGTTTATTGTACCGCAAGTGTTTCACAGATTATCGAAAGCGAAAATAATCGTCAGGTTTGGTTTAAATTACCTACTAAAGACGTGATGAAATATATACTCACCAAAGGATTTATCGCGATTGACGGCATCAGTCTTACTATTGGTGAAGTGAAAGACGATGAATTCTGCGTGAATCTAATCCCTGAAACTTTACACCGAACACTTATAGGTAAACGCCAAATTGGTGATTTAGTGAATATCGAAATCGATCCACAAACACAAGCGATTGTGGATACAGTGGAACGATATTTAGCAGCTAAAGCTTAGTTGGAATGAAAAAAGTGCGGTAGAAAACAATGTTGTTTTCTACCGCACTTTTAATTCTTCCGAAGGAA # Right flank : TTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 45905-45077 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVSL01000012.1 Haemophilus parainfluenzae strain 146_HPAR 253_45904_1872241_43+,97+,42_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45904 36 100.0 30 .................................... TTCTAATACCCATTTTCCGTATCGGTGAGC 45838 36 100.0 30 .................................... ACGCCTAATTGTTGACGGTCGAAGATTTGA 45772 36 100.0 30 .................................... TTAAAAGTATCAATGCTTGCATCTACTTCG 45706 36 100.0 30 .................................... AACAAGGCTTGAGATTGTAAATTATGATAA 45640 36 100.0 30 .................................... AAATGCTCGCCGGGATTTTCTGTTAAGTGA 45574 36 100.0 30 .................................... TAGAATGTTCTCATTTTTTAGATAACTACC 45508 36 100.0 30 .................................... ATTGTGTCAGCACACTGCCTAGCACGTTAA 45442 36 100.0 30 .................................... CATATCACGCTCAGCTATCACAGTGATTAG 45376 36 100.0 30 .................................... ATAAAAGCCGAATTTGTTTACTTTTAAAAA 45310 36 100.0 30 .................................... CCAAATTGTTAAAGAGCAAGTCAATCTGGG 45244 36 100.0 30 .................................... TCGCCAAAGTTTAAGAAGCTCAAACACTAA 45178 36 100.0 30 .................................... AGCTAAAACCTGATTTTATAATAGAGTTAG 45112 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Left flank : | # Right flank : AGGGACACCCAAAAGCCCCGTGCCGTAAGGTTTAGGGGCTTTTGTTTTGTCTAAAAAATGGCTAAAAAAGCAATAACTGATTTGAATTGACCTTTTTTTCTTGCGGTTTTTTCTCTCCCACTAAAATTTCCATACTCGCAAATTGTTTTTCTGTAATAGATAAACATCGAATTGATCCCTCTTCAGGTAAGTGTGCGACGAGTCTTTTATGATGTTTTTCTAACGCATCTCGCCCTTTAATAATTCGAGTGTAAATAGAAAGTTGCAACATTTGATAACCATCTTTAAGTAAAAATTGACGAAATTGGTTTGCAGCCCGCATTTTTGCTTTAGTGGTAACCGGTAAATCGAATAAAACGATCATACGCATAAATACCTCCTCACTCATATTGATATTCCTGCAATGTATCGATCTCTGGTAACTGCAATAATGTGGCATTTTTTTGAATAAGTGCAATTTGTAAAGAGGTAATGGTTTTATCAATAGCAGTCAAAACACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //