Array 1 1328-200 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKE010000019.1 Escherichia sp. DSM 109009 seq19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1327 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 1266 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 1205 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 1144 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 1083 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 1022 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 961 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 900 29 96.6 32 ...........C................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 839 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 778 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 717 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 656 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 594 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 533 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 472 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 411 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 350 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 289 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 228 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25757-28713 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKE010000017.1 Escherichia sp. DSM 109009 seq17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25757 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 25818 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 25879 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 25940 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 26001 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 26062 29 100.0 32 ............................. ACTCTGATAGCCTGCTCAGAATCAAGGCGCAG 26123 29 100.0 32 ............................. CCAATATTTTTTGCATAAGATAAAGGTGATAA 26184 29 100.0 32 ............................. TTCTGTCAGCGCAGGCATACGGCCCGCCTGTG 26245 29 100.0 32 ............................. GCCAGGCGGGAAGCGATGGGCGGTTAACTGGT 26306 29 100.0 32 ............................. CGGCGACGATGATCCCCTCAGGTATTGCGCAG 26367 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 26428 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 26489 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 26550 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 26611 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 26672 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 26733 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 26794 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 26855 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 26916 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 26977 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 27038 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 27099 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 27160 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 27221 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 27282 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 27343 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 27404 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 27465 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 27526 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 27587 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 27648 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 27709 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 27770 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 27831 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 27892 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 27953 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 28014 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 28075 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 28136 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 28197 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 28258 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 28319 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 28380 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 28441 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 28502 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 28563 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 28624 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 28685 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //