Array 1 19930-18865 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZKB01000013.1 Escherichia coli isolate F2_93, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19929 29 100.0 32 ............................. GTGTTTTTGGTCGGCACGAGAGGATTTGAACC 19868 29 100.0 32 ............................. TTACCGCTCTACGCCGCCCCGCCAGCGCCAGT 19807 29 100.0 32 ............................. GTATCTGCATATCATCAATTAAAAATCCCTGA 19746 29 100.0 32 ............................. GTAACACCCTTAAACGGCCCGCTTTGGCACAA 19685 29 100.0 32 ............................. CGCGAGCGCGTTAGCTGACGACATGATCCAAA 19624 29 100.0 32 ............................. CAACATATTTAAACGATTTAAGCCAGGCATAT 19563 29 100.0 32 ............................. TTCTGGGTAACTGGGCGTGGATATCCGGCGAT 19502 29 100.0 32 ............................. CAGCCCCTGAGTCAGTGGATGATTGCGAATGA 19441 29 100.0 32 ............................. AACTTTTTAACAGTGTGGCGCAGGCGATGGGC 19380 29 100.0 32 ............................. GTGCGGCAGATATTGACCGCGAAGCGGTTATC 19319 29 100.0 32 ............................. CATATCGCGATCGCGCCGGGTACGAAAATCAC 19258 29 100.0 32 ............................. AAACACCTGAACGATGTCATCAACGACGTAAA 19197 29 100.0 32 ............................. AGGACGTAAACCCAATGAAAAACATGATTGCG 19136 29 100.0 32 ............................. CGCGGCAATGGATGCGCAGGTACGCGAATTAA 19075 29 100.0 32 ............................. GTGTTTGAGGTGCCGCAGCCAATCTGTACGTC 19014 29 96.6 32 ..............A.............. ATCTCGCTTCTGATGGTGCACCTCATCAATAG 18953 29 96.6 32 ..............A.............. AGATTTTGGGACAACGTATTCAGTCTGGACGA 18892 28 86.2 0 ............T.A..........-..A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.9 32 GAGTTCCCCGCGCCTGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTCGATTTTAGTTTGTATAGAGTTATTTTAATTATTTACTTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TTTAGGTATGTTCAGGCTGGGCAGTTTTCCGCCCGGCCTACCTCATTCACACATTCGACCAGCTCTGGATCGAATCCGCATTCCCCAATTCCCCATGCATCACTTCATACGATTTTTTCAGAATCACATCAGTGTGTTTGGTTAAATCTTTGAAAATGCCTTTATTCATCGCGTCGTAGCGTTTGGCATTGCTCTCAACAGGCATAAAGATATCTTTCACGCGAACCATTTTATCGACAGCCGTTGCGTAATCCGGGTATAGCCCCAGACCTACCGCTGTATTAATCGCTGCCCCCAGGCTTGCACAACCGTTAATGGCGTTACGTCGTGCCGGAAGGTTGAACACGTCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCGCCGCCAGTAATGATCACATGCTTCGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTGTTCTTCAGCGTCAGCGCCACGCTTTCCAGTATCGAACGATATATCCATGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCTGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCTGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 171303-171505 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZKB01000005.1 Escherichia coli isolate F2_93, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 171303 28 100.0 33 ............................ AACCTACCGTCTTGGCTAGCGGTTGCAGCGAAC 171364 28 100.0 32 ............................ GGAACAATCTTGCAAAGGCTGTGAAAGTTGGC 171424 28 100.0 28 ............................ TTCACAGGTAACATACTCCACCCACCAT 171480 26 85.7 0 ................A...-A..-... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 96.4 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTGCGGACTTTTTATTTATGGGGTGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAACTTGTGCAGTATATCTACATCGAGACAAGTTATGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 91862-90613 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZKB01000017.1 Escherichia coli isolate F2_93, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91861 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 91800 29 100.0 32 ............................. AAAAAATGCGACGACCGCAGCCATTCCGATCT 91739 29 100.0 32 ............................. AGATCAACACGGTAGATATTTCCGTGATTGGG 91678 29 100.0 32 ............................. TCATACGCCTGGTATAGCGATCATCCCGATGA 91617 29 100.0 32 ............................. GCGTTGGAGTTCGCGGCGGCATTATTGAGCCT 91556 29 100.0 32 ............................. AGTCTTTAATCAAAATGGATTTTTATAATGAA 91495 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 91434 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 91373 29 100.0 32 ............................. CGGTGGCAGTGATGAGGCGTTCCCAATTAATG 91312 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 91251 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 91190 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 91129 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 91068 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 91007 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 90946 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 90885 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 90824 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 90763 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 90702 29 93.1 32 ............T.....A.......... GACGCACTGGATGCGATGATGGATATCACTTA 90641 28 75.9 0 ..A........C..T....T-.G.....C | C [90616] ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGATTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //