Array 1 90517-94201 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINWD010000025.1 Halomonas sp. IOP_14 contig25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 90517 28 100.0 32 ............................ TCCGGGTCATAATCTTTATTTGTAGGTACACG 90577 28 100.0 32 ............................ GCACTCGGCGGTATTCATCCAGCGCATGTTGC 90637 28 100.0 32 ............................ GCTGGCTCTTGGGGGAGAAGAAGCGCGGGGAG 90697 28 100.0 32 ............................ ACTAACGTTTATTAGGTCCTAGCCAAATTAGC 90757 28 100.0 32 ............................ TGGAATCATATTATTAAGCGTCGCTTAGATAT 90817 28 100.0 32 ............................ CACATAACGGTAACCGCTAACGGCGAGGCCAT 90877 28 100.0 32 ............................ CTAACAACGTCTGCGTAAGCATTCATTGCAAC 90937 28 100.0 32 ............................ GACATAACGGTAACCGCTAACGGCGAGGCCAT 90997 28 100.0 32 ............................ TCAGTCTGTCAGGAATACCGCAAAAGTGTTTT 91057 28 100.0 32 ............................ GCCCCGGCCGTGTTGTTCAGGTGAACCTGCCC 91117 28 100.0 32 ............................ CAAGGCAATCTCCGCGATATTCCAAATATCCT 91177 28 100.0 32 ............................ AAGGGTGCCGCTGGCACCGGCATCACCGATAG 91237 28 100.0 32 ............................ ACCATCGGCGGCGCCGTCACGATGACGTTTGC 91297 28 100.0 32 ............................ CATCCACGACGCCGCGATGCTGCGTATGACCG 91357 28 100.0 32 ............................ TTGTGGACATCATGAACCTTGACGTTGCCGCC 91417 28 100.0 32 ............................ TCGATTTTGTATTCAATGTGAGGGTCGCGTTC 91477 28 100.0 32 ............................ ATGGTCAGCGTTCGATTACCCTGGGTAACCGT 91537 28 100.0 32 ............................ AAGTGGCGCAACCGCTGCAGATGGCAGCATCG 91597 28 100.0 32 ............................ AAGCTGGCTGAAAAGAGCGGGCTGCCCTACGG 91657 28 100.0 32 ............................ AGACTGCATTTCGTGCTCCATGCGCGCTTCTG 91717 28 100.0 31 ............................ CTGCCAGCACTAACCCTGACTCCTGGCGCAA 91776 28 100.0 32 ............................ AATGTCGCTAGCCAGAAATTCAGCAAACTCCA 91836 28 100.0 32 ............................ AGCAATCCGGCGGGCTTGGCCTCGATTCGCTC 91896 28 100.0 32 ............................ TGACTGCATTTCGTGCTCCATGCGCGCTTCTG 91956 28 100.0 31 ............................ CTGCCAGCACTAACCCTGACTCCTGGCGCAA 92015 28 100.0 32 ............................ AATGTCGCTAGCCAGAAATTCAGCAAACTCCA 92075 28 100.0 32 ............................ AGCAATCCGGCGGGCTTGGCCTCGATTCGCTC 92135 28 100.0 32 ............................ TGAACGCCGCGCTGAACCTCGCCCCATGCTTT 92195 28 100.0 32 ............................ GCTAAAGCAAATGGGTTCACCAGCCCGGCAAC 92255 28 100.0 32 ............................ GTCCAGGGCATCAAAGAGCGACTCGCGTATTT 92315 28 100.0 32 ............................ AGTACGGTTATTCGACAAATAACCGGCAGGGT 92375 28 100.0 30 ............................ TAAGCGATCGGCTTTTCCCATTCGTTAACC 92433 28 100.0 32 ............................ TATTTTACCGAAGGGCTTGAGCGTTGAGAAGT 92493 28 100.0 32 ............................ GAAAAACTCAGAACACACCGGCCCGAGGCCGA 92553 28 100.0 32 ............................ TTTGCGCCTAGCGGCGCTGTGTTTGGCAATAG 92613 28 100.0 32 ............................ ATTAGTAAAATTCTGAAAGAGTCAATTGCGGG 92673 28 100.0 32 ............................ CGCCAAACCACCCAACAACTGGGCAGCATGAT 92733 28 100.0 32 ............................ TAGCATGGGTGCGCCGGAGATCAGCATGTCTG 92793 28 100.0 32 ............................ AGGATGTAGCCTTTGCGGGTGAGCTCGCGGAA 92853 28 100.0 32 ............................ GACTGGCGGGATGATTGCGCCCACAACGAGCA 92913 28 100.0 32 ............................ TGTGAGCGAGATGCCTCCGCTGGTGACCTGAT 92973 28 100.0 32 ............................ GATACGTTCGACGAGCCAGAAGACACGATCAT 93033 28 100.0 32 ............................ GCCCAGGAGGACGCCACCCCATGAGCTTTGAT 93093 28 100.0 32 ............................ AGGTTGTGCCAGCGTTTGTGCTGCTGGCGTGG 93153 28 100.0 32 ............................ AGCGCCAACGGCCACCAGCCAGGGCTGCCCAA 93213 28 100.0 32 ............................ TGGTCGCCTGTCCATGGCTCGCCTGTGCGGGG 93273 28 100.0 32 ............................ AAAAACGTCTCAACTGCTGGAACGCTTTTCCT 93333 28 100.0 32 ............................ TGGACAAGCTAGCCGTCGCGTTAGGCGTTTCA 93393 28 100.0 32 ............................ TACGTGGCCGCCCACGGCTGCGAAACCAAAGA 93453 28 100.0 32 ............................ GTCGCGTTTGGCGGCGGCTTTAGTGATGTAGT 93513 28 100.0 32 ............................ AATATGAAGCAGCATACTGATTTCAACGACTT 93573 28 100.0 32 ............................ TGGGCGCCGGTTTGTTTTTTTTCCTTTACTTG 93633 28 100.0 32 ............................ TGTCGTGGTAGGCAGGTCAAGGCAAAACACCC 93693 28 100.0 33 ............................ CGCATAGGGGAGACGCGGTTAGCCCGCTGGGAT 93754 28 100.0 32 ............................ ACCGTAATGGGCTGCAATCCCGGCTTTTTTGT 93814 28 100.0 32 ............................ TGCAGGCGCTGGGTTTCCAGCACCCGCTCCGC 93874 28 100.0 32 ............................ TGAAAAATCCCCACCAGGATAAATTGTGTTTT 93934 28 100.0 32 ............................ TTCGCCTGTCCAGCCAGTCCAACCGCGCTTAG 93994 28 100.0 32 ............................ TTCGCCTACGAGAACATCGACGACGCCTGGCA 94054 28 100.0 32 ............................ TTCCCTAACCATCGTGTCAATCATGGGTAGTA 94114 28 100.0 32 ............................ AATCTCGCTAAAGGTGCCGCTTAGATCAGACG 94174 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 62 28 100.0 32 GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CACGGCTGGGGCAATTGATGGGCGCTGACTGGCTAACCGGCATGCGTGATCACACCCAAGTCAGCGAGGTGCTTGCCGTGCCCGCCAATTCTCAGCACTTCAACGTGGCGCGCAAGCAGTTCAATACGGGCAGCCCAAGCCGTGCCAAACGCTATGCCAAGCGGCATGACATTTCGGAAGATGAAGCGCAGCAGATTTATGCCAAGCTAGCGGCGCGGCGCATTGAGCTACCCTTCGTGCAAATAAACAGCCGCTCCACCCAGCAGCGCTTTAGCCTGTTTATTGAACACGGCAAGCCTCAGGAAAAACCGGTGGCGGGTTCGTTTAATCACTATGGCTTAAGCCCTGACGCCACAGTGCCGTGGTTTTGACCCTTTTTTCTAACATGAAAATAGGCGACCAATAATCAATCACTTAGCGGTGTCGCTCGAAAAAGGGTGATACCGCTTTTTTTGGCTAAAGCTCTTTAACAATCAGCACATTAATTTTGATATGCTCTT # Right flank : AGTCAGCGTGCTATTAACGACGAACAGGTCAAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 30-897 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINWD010000026.1 Halomonas sp. IOP_14 contig26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30 28 89.3 32 ..G........CC............... AATCTCGCTAAAGGTGCCGCTTAGATCAGACG 90 28 89.3 32 ..G........CC............... AATCTCGCTAAAGGTGCCGCTTAGATCAGACG 150 28 89.3 32 ..G........CC............... AGTCAGCGTGCTATTAACGACGAACAGGTCAA 210 28 100.0 32 ............................ ACCAGTCGCGCGGCTTCACTTGGACGCATGCC 270 28 100.0 32 ............................ ACAACGACGATGCCCGGGCCATGCTGGATAAG 330 28 100.0 32 ............................ ATTGCGCTAGAGCTGCTAACCCAGGAACAGGT 390 28 100.0 32 ............................ CATCCCCGCAAGCCCCAGCCTCAAACCCCTCA 450 28 100.0 32 ............................ TCGAATCGGACAAAATAACCGTCATCCTCGAT 510 28 100.0 32 ............................ CGCGACCGAGCGCAACAGGCTGTTAGCGCTGC 570 28 100.0 32 ............................ TGTGCCTGCGGGTACTAGTCTCAAACTCTCAC 630 28 100.0 32 ............................ CTCGCAGTAGGCGTGGATGAATCACTTGCCCT 690 28 100.0 32 ............................ AAAATTAACCGCAGGAGTCGGCAGGCATGAGA 750 28 89.3 32 ..G........CC............... AGCCAGCGGGCGGCTTCGTGGCCGGTCATACC 810 28 96.4 32 A........................... AAATGAAGATGCTGAGTGGGAAAGCTATGCGA 870 28 85.7 0 ...........CCT...T.......... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 96.0 32 GTTCGCTGCCGTGCAGGCAGCTCAGAAA # Left flank : CCTAACCATCGTGTCAATCATGGGTAGTAG # Right flank : CTGTATCGGACTGTGAGACCCATTTGCTGTGTGGTCTCTTGGTGCTCTGCCGCCCAGGCAATATGGCTATAGATTTAAAGTATGTGCCCGTGGCACCGCTGCGCGGTGCTTTCGCGGGTGCGCTAACGCTTACGCAATGGGATGGACTCCTCCTCACCCTACTCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGTGCAGGCAGCTCAGAAA # Alternate repeat : GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGTGCAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //