Array 1 340164-338804 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VXDF01000001.1 Haemophilus seminalis strain SZY H2 Scaffold1, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
    340163	    32	 100.0	    33	................................	AACTATGATCGTCATGATCATAGTAGCCGAAGA    	
    340098	    32	 100.0	    35	................................	TAGCTTATGAAGGCATAAAACAACAATTAATAGAG  	
    340031	    32	 100.0	    35	................................	TTGGTAACAATGGCCTCAGAGTAAGGATTATCGCA  	
    339964	    32	 100.0	    33	................................	CGTAAGTGATGGTTGAGCAAAGCGTAAGAAAAA    	
    339899	    32	 100.0	    33	................................	ACTACCCTGCTCAAGGTGTAAAAGATATAAATT    	
    339834	    32	 100.0	    35	................................	AGGGTCCGCAAAAGTTGCTGAAACCAAATCACTGA  	
    339767	    32	 100.0	    35	................................	TCTACCTCGATTTTCTTGACTGGCGATATTCAAAC  	
    339700	    32	 100.0	    34	................................	AAAGATATGTTAGTTTTGGAAGCCAATTACCCAA   	
    339634	    32	 100.0	    35	................................	AGTACGGTTTAATTTATCCTTTAGCTCAAAATCAA  	
    339567	    32	 100.0	    34	................................	AATCTTTCAAAAATATTGATTTTATGGAAAACAG   	
    339501	    32	 100.0	    34	................................	TCTTAATTCCTCATTTTCAGTTTTTAACATAGCT   	
    339435	    32	 100.0	    34	................................	CTTTTATTTATATCTTGTTTTATTTATTTAGGGG   	
    339369	    32	 100.0	    35	................................	TATTTTAACTTTCATCAAACCCGTTTAGGGCGTAA  	
    339302	    32	 100.0	    34	................................	CATTTAATGAATACGATATTTACGGCTTCGACGG   	
    339236	    32	 100.0	    34	................................	AAGTAGCACATACGAAGGGTCAAAAATTATTTGG   	
    339170	    32	 100.0	    37	................................	CCCCATTCAAACCCATAAAACCTAAAATCAACATTAA	
    339101	    32	 100.0	    34	................................	CCGCCAGTAACTCATTTAGCATTTGTTGATAGCG   	
    339035	    32	 100.0	    34	................................	CACTCAACGATGTCACTGAGGAGCAAATTAAAGC   	
    338969	    32	 100.0	    33	................................	TCGCAGTAGGTACTCAAAATTTGCTTTCCAGTG    	
    338904	    32	  96.9	    37	.....................C..........	ATTCAGCAAGGATTGTTTACCGTACGAGTAGGGCGAG	
    338835	    32	  75.0	     0	.T...........T..AA......A..T..GT	|                                    	
==========	======	======	======	================================	=====================================	==================
        21	    32	  98.7	    34	GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC	                                     	       

# Left flank :   TTGATGAGATAAACTATGTTAATGCTGATTACTTACGACATTTCTTTTGATGATCCAAATGGGCAAGCGCGATTGCGCCGCATTGCAAAACATTGCTTAGATTACGGCGTGCGGGCGCAATATTCGGTATTTGAATGTGATGTCACGCCTGACCAGTGGGTCATATTGAAAAACAAACTGTTGGAAACCTACGACCCTACATGTGACAGTCTGCGTTTTTATCATTTAGGCAGTAAGTGGCGTAATAAAGTGGAACATCATGGGGCAAAACCAGCAATAGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCCTTATTTTCTTTAACAATTTGAATAAGTTAATCTATTTGTATAACGGCGGTATGACCGTTATACTTATTAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATACGCTGATTTTTCTTGCTTTTTTATGTAGAGA
# Right flank :  GAGGATGAAAGAAGATAAATGACTATGTCAGTAAATAGATAAATTAATATTTAAATACAAAAGAGCGGTCAAAAATATGATAATTTTTGGCCGCTTTTGTTTATACGATTTTAATTTAACTAATTTAAAATATTAACCTGCTCTAAAAATTCTTCTTCTGTTAATACTGCAATATTTAGTTCCTGCGCTTTGGCTAGTTTAGAGCCAGCAGCGTCGCCTGCGATGACAAAGTCCGTTTTACTGGAAACAGAACCACTTACTTTTGCGCCTAGCTGCTGTAGTAATACTTTTGCTTCGTTGCGACCCATTTGAGTGAGGGTGCCAGTGAGGACGACGGTTTTATCTTTGAATAAGTTTTCACTGGCTTCTTTTACTTCCACTGTTTCCCAATGTACACCTTGTGCGATTAAATCATCAACAACGGCAACATTATGTGCTTCACGCCAGAATACAAAAATTCTGTTTGCTACAACTTCACCCACATCAGGCACTTGTTGAAG

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [6,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-4.40,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [9-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.28   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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