Array 1 108358-109012 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCR010000006.1 Flavobacterium psychrophilum strain 97705 contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 108358 46 91.3 30 T.G..T...G.................................... TAACTTAAAATAAATAAACGCCATGACACA 108434 46 97.8 30 ..........................................T... TCACGATCTAATGACGAAAACAATACAAGT 108510 46 100.0 30 .............................................. CCAAAATGGTTGTATGATTCTGAACTAATA 108586 46 100.0 30 .............................................. CAGTAGGAAAAAAAACAATTGATGAGTATT 108662 46 100.0 30 .............................................. TTCAAATTTACATGCACTTAACAGGTTTCA 108738 46 100.0 30 .............................................. AGACCCCTGTAAACGATTGTTTAGATATTA 108814 46 100.0 30 .............................................. ACACAGCTGAAGCACTTGACGAAATGATGC 108890 46 100.0 30 .............................................. CGTTGTTGGTTTGCGACTCTTGCGGATTTG 108966 46 93.5 0 .......................................G...T.T | A [109008] ========== ====== ====== ====== ============================================== ============================== ================== 9 46 98.1 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : TAAAAATGGCATGTTTTGGTGGTTCTTCTAATGTTTTCAAAAAAGCATTAAATGCTGCAGATGATAACATGTGAACCTCATCGATAATATAAACTTTATATTGTCCCGTTTGTGGGGGGATACGAACTTGATCGATTAGATTACGAATATCATCGACCGAATTGTTTGAAGCCGCATCGAGTTCGAAAACATTGAAAGCAAAATCTTCGTTCGGGTCGTCGTAACCTGGTTGGTTTATTTTTCTGGCTAAAATTCTGGCACAAGTTGTTTTTCCTACGCCACGAGGACCAGTAAATAATAGGGCTGATGCCAAATGATTTGTTTCTATCGCATTTAGTAACGTATTGGTAATGGCTTGCTGCCCCACCACGTCTTTAAACGTTTGCGGACGATATTTACGAGCCGATACTACAAATTGTTCCATAAAAAAATATTCGAAAGCAAATATAATGGTAATAAGTGAAAATGCAAAAGTGAAAAGTGAAAAGTTTTAAAATGTT # Right flank : CCCGCAAAGTGTGTAAGTTAAAAAGTTAGGCTTGAATTTTATAATCTGAGCCTTTTGTCAAATATAAGATTAAATTGATTTAAAACAATACCCCAATTTTGTATTGGCATTGACCATTTTTTTGTTGCTTCTTTTAAAGCTAAATA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 7733-6395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCR010000053.1 Flavobacterium psychrophilum strain 97705 contig00053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 7732 46 100.0 30 .............................................. CTAAATCTGTTCGTATATCGTCAAATGATA 7656 46 100.0 30 .............................................. TGTTGTTTTTGTTATTTGTTATGCAAAACA 7580 46 100.0 30 .............................................. AAAAAGATGCTAGGGAAAAAGCTAGAAAAG 7504 46 100.0 30 .............................................. CGAGAGCTTATCGATTACGAAGCTAGCCCA 7428 46 100.0 30 .............................................. TACAGAACACGAATAAAGATACAACCCTGC 7352 46 100.0 30 .............................................. CATCTCATAAATCCGAAGGAACAAACCAAG 7276 46 100.0 30 .............................................. ATTACCAAAATAGTCCCTATGGGCCCTGGT 7200 46 100.0 31 .............................................. ACGAGAAAATTTTTGATTTTTTCCCAAACGT 7123 46 100.0 30 .............................................. CACTTCGCTCGGGTTTTGCACACCCGCCAC 7047 46 100.0 30 .............................................. AATTTCTTTTTCATTTTCTACCAAGTATAC 6971 46 100.0 30 .............................................. TAAATAGTTATATAGTACAAAAGCATATAC 6895 46 100.0 30 .............................................. TAGATTCTTTGATTAAATATCTGAACGATT 6819 46 100.0 29 .............................................. CAAAGTTTATTTAGGAAAACAGAATACAG 6744 46 100.0 30 .............................................. ACAATAAAAGTAAAGTTTGGTTTGGGTTAC 6668 46 100.0 30 .............................................. GTTACTTGTAACCAAGAAGAAGCCTCTATT 6592 46 100.0 29 .............................................. TTGCTCCTAGTAATAATATTTTTGCGAGG 6517 46 100.0 31 .............................................. TTGAAAAAATATATGAGACAGACGAAAGTCA 6440 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 18 46 100.0 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : GTAAATATATAAAATGTTAAAAAGTTATTTCCGAAAATTTTTGAGCTTTTTGAATTAGCTCAAATTTTCAGAATAACTTTTTAACTTACACACTTTGTGTTATACTGCCTATTTTTTTAGCTTATAATTACCAACGAGAAAAACTAGCATACGAGATTAGAGAT # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGCTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTGTGTACTTCGGCATTTTCTCTGCTGGCACAAAACCGCATATAGATCGAAAATTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTGGGCAGGTCAAAAAATACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //