Array 1 1003249-1004562 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057101.1 Escherichia fergusonii strain RHB38-C04 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 1003249 29 100.0 32 ............................. CGAACGCATGGTCCACACAGAGAGCCAGTGGA 1003310 29 100.0 32 ............................. CATTCAAACGAACGAACCACTTTCTGGTAACT 1003371 29 100.0 32 ............................. CGATCACCGGCGGCGACCTGGTGGAAATCGAC 1003432 29 100.0 32 ............................. CAAAATTAATTTTGTTTTATCCTCGTCCAATG 1003493 29 100.0 32 ............................. ATCAGCCGGAATCTCTCGCCCCAACAGCAGCA 1003554 29 100.0 32 ............................. TATTTGTTATAGCATAGCGAGACACAAATTAA 1003615 29 100.0 32 ............................. CATCACGCCTCACTAATTGAAAAGCTAATATT 1003676 29 100.0 32 ............................. TTGCCCAGGCTTTTGCGAAAATTTGTGATTTG 1003737 29 100.0 32 ............................. GCTGGGTATGTAGATGGCTGGAACGCCTGTCG 1003798 29 100.0 32 ............................. CCAGTCGCTTTCAATTTTCGGCGTGTAGCCTT 1003859 29 100.0 32 ............................. GTCAGTTAATCCCGACCGATGCCGGCACAAAG 1003920 29 100.0 32 ............................. CCAGCTCTGATTACTCCACGGCAATAGGTTAC 1003981 29 100.0 32 ............................. TGCCTCTATCCGATCCGGACTTGTCACGCGAA 1004042 29 100.0 32 ............................. TTTCAGCGAGCGGTTATAAACGACCTGCGCAT 1004103 29 100.0 33 ............................. GACCTGGAATATCGTTTCGGGCGCGACTCTTAC 1004165 29 100.0 32 ............................. GTCAGGATTTGGAGAATATGTCTCCAGTAGAC 1004226 29 100.0 32 ............................. TCTGATTCCGAACAAACCTAGCGGGCGAATTC 1004287 29 100.0 32 ............................. GGTATAGTTCCAACATACACGCCTATAAAAGA 1004348 29 96.6 35 ............................A CCGTTTATTCTTATCGCTGGCGTTAACGTCCACAA 1004412 29 93.1 32 .........A..T................ CCGAAAGTGGGCGACTACGCGGTCAACGAAGA 1004473 29 100.0 32 ............................. GACACAGAGCGCCGCTATAGCGCCTATGCCAA 1004534 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= =================================== ================== 22 29 99.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTATTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTTCTTTAGGATAACGGTTTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATGAATCTCGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGATTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTACGATTCGCGTAGTCTTTTATTCTAAGGACATCGATTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGGACTTGTTATAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1030070-1031501 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057101.1 Escherichia fergusonii strain RHB38-C04 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1030070 29 96.6 32 ............................C GAGGTGCCGCCAGTGTTATTTGATGCGATTTT 1030131 29 100.0 32 ............................. CGCGCCGGTTATTCGAGATTTGCGCGTGACGA 1030192 29 100.0 32 ............................. GTGACGAGGTCGACGGCTGGCCGCTGGAGGTC 1030253 29 100.0 32 ............................. GCTCTGATGGTTCGAACTGACTTCTCTCTTGG 1030314 29 100.0 32 ............................. GCCTTGGATACGGGCAGGGCGTCCGACTGGTC 1030375 29 100.0 32 ............................. CATTTGTGCCGAACTGCCGCGTAACCCATTTC 1030436 29 100.0 32 ............................. GGTTGCAGGTTGGTTATCTGGAATCAGCACGC 1030497 29 100.0 32 ............................. CCGACGTACAACTACGGCGGTGTGTCGATTCC 1030558 29 100.0 32 ............................. CGCCATATCCCATGCCATGTATTCTCTATCGC 1030619 29 100.0 32 ............................. CATATCAGGTATATCGTAACGGCGGGGCCGAC 1030680 29 100.0 32 ............................. ACATCACGGTCAGCACAACGCCTGTTGCCTCT 1030741 29 100.0 32 ............................. TTGAAATGGCGATGATGGAATACAACGTGAGT 1030802 29 100.0 32 ............................. GCCCAGGGATTCCGCTCGTTTTCATCAAAATA 1030863 29 100.0 32 ............................. TCGCCCTGGCTGAGCTGATGCGCATGGACGAG 1030924 29 100.0 32 ............................. GGCGCTGATTGAAGTCACGCGGTAAGTAAAAG 1030985 29 100.0 32 ............................. GGCGGGGCGGGGTCGGTAGGCAAAATCCCGGC 1031046 29 100.0 32 ............................. ACATAATGCTCAGCGTTCCCCTCATCGGTCCG 1031107 29 100.0 32 ............................. CGCAAATGCTACAAAAACCCCATCAGGCAATT 1031168 29 100.0 32 ............................. AGTGAGTCTCGTCGTCGTCGTGCATTGCGGGA 1031229 29 96.6 32 .T........................... GGAATCTGACAATACGGCAAAGGTGACTGTTG 1031290 29 96.6 33 .T........................... AGTCCTTAACCTCGGTACTAAAACGGTTAATGC 1031352 29 96.6 32 .T........................... CCTCTGGATTACTACCGATAACTAACACTGAA 1031413 29 96.6 32 .T........................... GTAATGCACTCACCACGGTTACAACAGATATT 1031474 28 79.3 0 .T..........T.........-.CT..C | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTAGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTGAGA # Right flank : CAGCTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //