Array 1 80997-81924 **** Predicted by CRISPRDetect 2.4 *** >NZ_CHDQ01000004.1 Yersinia pseudotuberculosis strain IP33250, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 80997 28 100.0 32 ............................ TTTGCCGCAGGGTGACGCTCCCATGCGAACCT 81057 28 100.0 32 ............................ AATTGAAATAATGGTTAGTGGTAACGGGCAAG 81117 28 100.0 32 ............................ GTCAACCTTCGGATGATTATACGGTGCTTTTT 81177 28 100.0 32 ............................ TAACACAGTAACTTCCGAGGCCGATGATGGTA 81237 28 100.0 32 ............................ TGTGATTTAGCGGCGGCCTGTGTGCGCCTGTA 81297 28 100.0 32 ............................ CGATATGACGCAGGCGGTCAATCAGGCCATCT 81357 28 100.0 32 ............................ TATACCGAGAAGCATTACAACGAAAACACCGA 81417 28 100.0 32 ............................ TGTGTAGCATTCCTGCTGATGGTCTCACCAAT 81477 28 100.0 32 ............................ TTGCGGAGTTCAATCACGTAAACCTGATTGTT 81537 28 100.0 32 ............................ ATTCCAATCATCAGTAACGTGTGTTCTTTCCA 81597 28 100.0 32 ............................ GGAACGTTGGATGAAGCACAACAATTAATTAT 81657 28 100.0 32 ............................ TGTAAATTCATAAGATCTTTTAAATAACTCAA 81717 28 100.0 32 ............................ TTAAAATTGTTGATGGCATAGCGATACTTTTC 81777 28 100.0 32 ............................ AAGCACAGCCGCAGTGCTTGCAATGTCCACGG 81837 28 100.0 32 ............................ TTACACGCTGGACGGCCAGGGAGACGAGAGCT 81897 27 89.3 0 .....................CC.-... | T [81923] ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGTCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAAACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATTGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCGCTGTCGTTCAAGGTATTTGGGTAGTTACGGGCACGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGCAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGTGGGTTTTGCCGCAGCAGTTGTAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 201057-198207 **** Predicted by CRISPRDetect 2.4 *** >NZ_CHDQ01000006.1 Yersinia pseudotuberculosis strain IP33250, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 201056 28 100.0 33 ............................ CTAGTGTAATAGCTAATAACACGTCTGGTATTC 200995 28 100.0 32 ............................ TTATCAAGGTGATGATAGGCACGACCCCAAAA 200935 28 100.0 32 ............................ ACAACGAAATATAATCTAGTGCTATTTTCATT 200875 28 100.0 32 ............................ TATTTCAGGTGGGGGCGGCGGGGGTATGGTTG 200815 28 100.0 32 ............................ GGTGGCTCTGGTTCAACTGGCGGATTTAACGG 200755 28 100.0 32 ............................ TTGCTAATGATGTCGGCAATGTCTTTCGGGTC 200695 28 100.0 32 ............................ CTTTAGTCTCGAAACTACGCAGTAAGCTTTTT 200635 28 100.0 32 ............................ TTCATAGTTCAAGCCTTGGCCTGCTATGACAC 200575 28 100.0 32 ............................ CAAAGAGAGTATTTTCTGAGGAACGAAGAAAA 200515 28 100.0 32 ............................ TTCATATGAACTCAATTTTCCGTTAATCTTTA 200455 28 100.0 32 ............................ GTAAGGTTTAATATGGGTATAAAACACGATTA 200395 28 100.0 32 ............................ ATTCAGCCATTTATGAACGGCTGGCTGGCTAA 200335 28 100.0 32 ............................ GTAAGGTTTAATATGGGTATAAAACACGATTA 200275 28 100.0 32 ............................ TGACTCCATAAGTGAACTGGCTCAAATCCAAT 200215 28 100.0 32 ............................ AGTGTTGGACGCCCGGTTATCATCTGCCCACG 200155 28 100.0 32 ............................ CTTTAGTCTCGAAACTACGCAGTAAGCTTTTT 200095 28 100.0 32 ............................ AAAAGCGGCAATCTGAAAAGAAAGCGGCTGAT 200035 28 100.0 32 ............................ ATTCCGGCACAAATGGATTACGTCAAGATATC 199975 28 100.0 32 ............................ GAGAAAACTTGACACTCTGGAAGAGACAGAGC 199915 28 100.0 32 ............................ ACCTCTAAAACAACACCACTACCCGTAAGTAG 199855 28 100.0 32 ............................ AACTTTAAACATGTGAAATTTTAGAGGGTTTC 199795 28 100.0 32 ............................ ATAGCAATGGTGGCTTATAAGCCTCGTTCAGA 199735 28 100.0 32 ............................ ACCTGCATACGGTAGAAGTTTCTCTGTGACAA 199675 28 100.0 32 ............................ TGACTCCATAAGTGAACTGGCTCAAATCCAAT 199615 28 100.0 32 ............................ AAAAATGCATTTGTAACTTATAGCCGTCTATT 199555 28 100.0 32 ............................ TGTAGGGAAATGAAACTACAAAATCGCTTCTG 199495 28 100.0 32 ............................ GCGTCTAGCATGTGCCCCAACGCCTCGATAAT 199435 28 100.0 32 ............................ ATACAAAGAAAGATTGGCTCAAGAAATAACCG 199375 28 100.0 32 ............................ AGAGAGACCGCTAAATCACCGCGCCCGGTAGC 199315 28 100.0 32 ............................ TGAATAACATCAAATATCCGGCTCATATAACT 199255 28 96.4 32 A........................... GGAATAAACCAGCGCGGGAGGTCGAAACCCAC 199195 28 100.0 32 ............................ ATCACGCCATTTTACCGCTTGCGTCTTGATGA 199135 28 100.0 32 ............................ TCAAGTGGCAGCCGACATCATGATGCTGTTCC 199075 28 100.0 32 ............................ GATATGCAGCGATATACACCGAGTGTGCCGCA 199015 28 100.0 32 ............................ TAGACCGTTGTGCTTGCCACACTGAGCTATCT 198955 28 100.0 32 ............................ AATAACTTCCCCAGGGCGATAGTGGCCCCGAT 198895 28 100.0 32 ............................ AGCTCTAGGCGCTCGGTAGCCAACATCACTAG 198835 28 100.0 32 ............................ TAGACCGTTGTGCTTGCCACACTGAGCTATCT 198775 28 100.0 33 ............................ AATCAGTTCGCGAACATCACTCTCAGATAAAAT 198714 28 100.0 32 ............................ TGGAGCGTAAAACCTCGTTAACCCCTTCTATT 198654 28 100.0 32 ............................ GGACAGTGTCATGAATTTGGCCCGTGCCGCGT 198594 28 100.0 32 ............................ GCAATCCGATGAATTCAATCTACCTGCTATCT 198534 28 100.0 32 ............................ AGAACCATTTCAGCCGCTTGCTTACCACTCAT 198474 28 100.0 32 ............................ AGAGCAATTTAAGAAACTGTATTCAGATGGCA 198414 28 100.0 32 ............................ GTGGCACGATTCGTCACGCGGTCGTAGCTAAT 198354 28 100.0 32 ............................ TGACATCATTCTCAGCCAAGTGGCCAATCACG 198294 28 96.4 32 ...........A................ ACTTTAATTTGCAGATCTGCAAAAAGGGGACG 198234 27 85.7 0 ...................A-.A.T... | C [198210] ========== ====== ====== ====== ============================ ================================= ================== 48 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGCGATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAGATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATTACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTGATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACTG # Right flank : TTCTGGGCCATGCGCTGATACTATTTGGGGATCAAAATTGCGAGCGGAAGCGCATTTTGTAACAGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTGCGAGTATTAGAGTAGGGTAAATAGCAGGTGGCATATCAATATATACCCGTCATACTTCAAATTGCATGTATGTTGGCTGCGCTCAATTATCCCAGTCACTTACTGGTGTAAGCGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGTTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGTCGTGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //