Array 1 690322-689986 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014821.1 Geminocystis sp. NIES-3709 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 690321 37 100.0 35 ..................................... ACAGCTTTAAGATATGATAGGTTTGGTAGAACAAT 690249 37 100.0 36 ..................................... GTGCTGGATACGGTGGGTTTGACGACTTACGTCAAA 690176 37 100.0 42 ..................................... AAAAAGAAAAATGAAAGATACTAAAAAATTAATTATAAATAT 690097 37 100.0 38 ..................................... TTAAATTCAGTACCACCATCATCTGCTCTATTAAATCT 690022 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 5 37 100.0 38 GTTGAAATAAGAAAATACCTTCTCTAGGGATTGAAAG # Left flank : CTTGTTTTGAGTGCTACTGAAAAAAATCTCAAGAAGAAATAGCACAAAATCAATTTCTTGAGATAAACTGGAAGTAATCGTGCCGCAGATCAAGTTAAATTAACCCCTGTTCTGTTGTTCTGTGAAAAATGAGGGGTAGTTTGCCTAGTAATAGGTTTGCTTTCTGTCCCTGATAACTGCTCTCTCTGATGCTGCGCACTGAATAAAGTGCGGAAACAAGGGGCACTCCCAGTAATAAGAGTTTGGGTTTACCAATGTAGTTGTTATCAAATCACCTCCGACCAAGGAGGAATCTCTATTTAAGCGTTAGTTAAAATGTACGAGTTACACAAACTCTGATTTTAGCCTTACGCAATCGCTAAAACTCTTATCAATTAAGGGATATAGCGTTTTAATAAAATGCAAAATTCGATCGAAAATCAGAATTTTAGTATTTTTAAGGGGGGCTTACGCAAACTGTCTTCACAAGCCTTGTTTTATAAGGTTTCTGACTAGGGGCA # Right flank : GCTTTTATTTTGAACTAAAACTCTACTAATTAGAATCTGTCATCGAGACGAAACAAAACGATCATATTTTCTTTTTAAAGTTATAATTTCAATAGTGCCGTAGATCAAGTTTTAACAACCTCTGTTCTATGAAAAATGAGGAGTAGTTTACTTTTTACAAGAAGTTTGCTTTCGGCTCCTGCTAACTACTTGCCCTGATGCTGTCTATCTTAGGATAGAGAAACTAGGCGCACTCCCAGCAATAAGGGTGCAGGTGTACTGCTATAGCGGTTAGCAAATCACTTTCGATCGAGGAAGAATTCTCTTTGAGAATTGAAAGCGAGTCCTGTCGCACCCAATCATTTAGACGACATTAATCTGTTATCACGTCATCTAATTTGTTAAGACGACACTAATCTGTTACCGATGACAAATAATTTGTTACTGTACATCAATTTAAAATACGAGCCAACGGCTAAGTAATACACGGGTGCGACAGGACTCGAACCTGTGACCGACTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATAAGAAAATACCTTCTCTAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 2 1556394-1556062 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014821.1 Geminocystis sp. NIES-3709 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1556393 36 100.0 39 .................................... TGGGGAACTCATTATATAAAAGGAAGTAAAAGAACTTTC 1556318 36 100.0 38 .................................... TCTGTAGTTTTTTTAGTCTTTTTTCGTTGTAACAATAG 1556244 36 100.0 38 .................................... TTATCAATTCCCTATTCGTGCCGATGGTGAAATAACTA 1556170 36 100.0 37 .................................... GGAGTAGTTACCCAAGCAGGTGCTTATTATAAACTAA 1556097 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 5 36 100.0 38 CTTTCGATCGCACAGAGAAGTAAATTCATCTGCAAC # Left flank : TCATCGTACTAATATCGATCGAATTATAGCAGGAACAGAACCTCGCATTGGGCAAACTGGATAAAAATTAAACAAAAAAGTTGGCATTAAAAAAAAAGATGAGCTATAATTAGTAAATGTGAAAACAAATGGGTCGATGCCCGAGTGGTTAATGGGGGCGGACTGTAAATCCGCTGGCTATGCCTACGCTGGTTCAAATCCAGCTCGGCCCACTGCCTTTGTAGCTCAGTGGTAGAGCACACCCTTGGTAAGGGTGAGGTCACGAGTTCAATCCTCGTCAAAGGCTTTCGTGTGAATGTCCTTGCAATGGTAAATTACAGGTATTGTCGAATAACATTTTATCTGTCATCTTAACGAATTAATTGTCGTCTTAACAAATTCCTGTCGCTGAATCATCGTTAACAAATTAAATGTCATTTTATGATTGAACTCGTGACCTCTTTCAATCCACATATATATCTATTATAGCTATTTTTGTATTTTGCAGTCTTATAATGATC # Right flank : CCCCCTTTTTGAAACCTTTGCTAAGACTAAATCCTAGAAGCAGTTTGCGAGGGATTATAAATGAGAACTATCTGAAGTGGATTCCTCCTTGGTCGGAGGTGGTTCAGTAGCCACCACTATAGTAAACCTATACCCCTATTACTGGGTGCGCACCTTATTCTTTATCGTGAGATAAACAGCATCAGGGTGGACAGCTACTAGGGTCAGAAAGCAAGTCCGAAGACAAACTAACCCACATTTCACACAGCACAGAGGTTCAAAGAACATAAACTGCGGTGCTATTATGTAATCAAATTGTCAAGGTACAAAAATGAGCAAATAGAACGGAAATAATATTCATTTACCCAAAACTAAATCCCTAGATTGCTCTTGAGGACTACCCCTTATAGGTTGTTTTCTCTCCTCTATGGATATAGAAAGTCTCTTGGCTTGATTTTGAAGACCATCGATGAAAAGACCATAACCCCATTGATGAACGCTCATACGATAGGTTTTAGCGT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCGATCGCACAGAGAAGTAAATTCATCTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 3 2935981-2935667 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014821.1 Geminocystis sp. NIES-3709 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================== ================== 2935980 27 100.0 44 ........................... ACTCTTAGGATTTACGATCGCCGTATTATCAGGTGTTTCAATCC 2935909 27 100.0 44 ........................... CCTGTAAATACCTACAATGAAAATATAAAATATCGTTTCAATCC 2935838 27 100.0 45 ........................... TTCCCCTTTCATTCTCTCTAAAACATCTAATATTTCTTCTGATTT 2935766 27 100.0 46 ........................... ATAATATGGGATAATCTTCTTCTACTTCAATATCTGGTTCTGATTT 2935693 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ============================================== ================== 5 27 100.0 45 CTAGTAGGTATTTATTATAGTTTAGAC # Left flank : TGACATTATAAAGTTGTAAATAATCTGTGATGCCTAATGACAATGGCAATTCGGGGCCGACTACTACTAAGTCGATCGAGTTTTCTTGTATTAACTTTAATATACTTTCAAAATCATCAACGGCGATCGCTACATTTTCACAGTTATTTAATACAGCAGTCCCACCATTACCTGGAGTACAAAAAACCTTTTCAACGGTGTCTGATTGTAACAATTTCCATGCTAAAGCGTGTTCTCTACCACCATTACCGACAACTAAAACTTTCACTCTTGTCTAAAATTCCTATTATGAAAAACATTTTAAATTTTACCTTGAAATGCGAAATCAATGACCTCGTTAAGTCTTACCAAAAAAAATTTGGGAGCATCCCATTTTTGTAAAAATATACAGCTATATAAAAAGTGACAAAAAGAATCAAATCAACTTCTCTGAGTAAATATAGGTTATTTAAAATATATAATTAATTTTGTCTACCTACTTACCTCTTCTGTTTCAATCC # Right flank : CATAGTATTCTCCAAAGCCAGTGAACGAATTACCCGCCTTCTAAACCTCTCAAAGAATTAACATTATTTTTAGTATCTAAAGATTTAATTATTTGTTGAATTTGCTCGATCGAGCTTTCTAGTTTTTGATGATACTCTTGACGATTTCTTAACATCATTAAGTTGCGATAATTTTTTAGTTTACCTCGAATAAATCCGTTAACAACATGAATAGCTTTTGGAGAATTTTCTGTTACTGCCCATTGAGCTTTTCTGATGAAAATATTTTTAGTTAATTCTGGTTCTAATCTGCCTAAATATTTCCCAGTACTTGTTAAAAAACTGAGAGGTATTTTGCGAGTTAATAATTCAGAGACAATTGCAGGAGAAAAATTTGCTCGTCCTAAAATTACTAGACCATCTATCTTGATAAAAGGTACGTCTAATAATTGTTTTTTATCAGCTTTAACTTGTAATCTTTCATCAGTTTTACCAATAAAGGCATCATCTTGAGTAATATA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAGTAGGTATTTATTATAGTTTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //