Array 1 4305222-4302572 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN824133.1 Klebsiella pneumoniae strain MS6671 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4305221 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 4305160 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 4305099 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 4305038 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 4304976 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 4304915 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 4304854 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 4304793 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 4304732 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 4304671 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 4304610 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 4304549 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 4304488 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 4304427 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 4304366 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 4304305 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 4304244 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 4304183 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 4304122 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 4304061 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 4304000 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 4303939 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 4303878 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 4303817 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 4303756 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 4303695 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 4303634 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 4303573 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 4303512 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 4303451 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 4303390 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 4303329 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 4303268 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 4303207 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 4303146 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 4303085 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 4303024 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 4302963 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 4302902 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 4302841 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 4302780 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 4302719 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 4302658 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 4302600 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17824-16704 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN824134.1 Klebsiella pneumoniae strain MS6671 plasmid A, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17823 29 100.0 32 ............................. AGCAACGTTTCCGGATTATATGGCTGGAACGT 17762 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 17701 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 17640 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 17579 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 17518 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG 17457 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 17396 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [17343] 17342 29 89.7 32 ......T.....CA............... CAGGTTATACTGGCAAAACGTCGATGGCTCTC 17281 28 89.7 32 .....-......CT............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 17221 29 96.6 32 .............C............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 17160 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 17099 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [17094] 17037 29 86.2 32 ...........CC..A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT TC [17021] 16974 29 93.1 32 ............CA............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 16913 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 16853 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 16792 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 16731 28 79.3 0 ........T.A.CA.........-....A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 93.5 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //