Array 1 575833-579092 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJDJ01000001.1 Klebsiella pneumoniae strain EuSCAPE_LU020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 575833 29 100.0 33 ............................. GCCCGCGCGAACCTGGGGCTGGGAGATTCAGCG 575895 29 100.0 32 ............................. CCTCGATCATTCTTGCCAGTTGGGAGTCGGAC 575956 29 100.0 32 ............................. CACCTCGCCTATAAATCGTACCAGCCTGACAG 576017 29 100.0 32 ............................. TCGTAGCTAATAAATTCGTTGCTCATTTGAAA 576078 29 100.0 32 ............................. GCATCGCTCGCCTCGTTCGGTGCTAACGCTGG 576139 29 100.0 32 ............................. CGGCTGCGCTGTTGCACATAGCCGCTCAACCT 576200 29 100.0 32 ............................. CGGCCGCGTTCTCCCCTGTGGGAGGGGTGGGG 576261 29 100.0 32 ............................. GAATTTATTGGGAGGTGATAGCTCTGGCAGGT 576322 29 100.0 32 ............................. GGTATGCAGGGCACACGCCAAAATAATTTTGC 576383 29 100.0 32 ............................. ATACGCAGTCATTAATCGCGGGTGTTACGCAA 576444 29 100.0 32 ............................. CCTGCTGTCATTTCCTTCGGCACTACCGGCGC 576505 29 100.0 32 ............................. TTACACAAGAGAAGCACTGACAACCATTCACA 576566 29 100.0 32 ............................. CCTAAATTGCCAATTTTCCTTGAGCGCTGGTA 576627 29 100.0 32 ............................. GTAACAGGTCAACTCTTTATCGCTAACGGCTC 576688 29 100.0 32 ............................. CTTTTCATTTTCTCATGACCGCCACCATTTCG 576749 29 100.0 32 ............................. AATACCGGCGGCAGGGATTTACGCCCGAGCAG 576810 29 100.0 32 ............................. CGCACGGTGCATTCACGCCCGCGCGCCTGTTT 576871 29 100.0 32 ............................. CATCGCTTTCCATCGCAGCTTTTTCCAGGCGC 576932 29 100.0 32 ............................. GTGACGCGCTGCAGTTTGCCAAAACCCTGCCA 576993 29 100.0 32 ............................. ATTTTGCGTACGCTCTCCCACAGCTGATCGTG 577054 29 100.0 32 ............................. TTTCCGGCAGCGTAGCCAACCCGGCCAACCGT 577115 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 577176 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 577237 29 96.6 32 A............................ GGTTTATAGAGGCTGAGGTATTCACAATGCGC 577298 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 577359 29 100.0 32 ............................. GGCCTGAACCAGAGCACGATCTACACCTGGAA 577420 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 577481 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 577542 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 577603 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 577664 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 577725 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 577786 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 577847 29 100.0 32 ............................. GGCCCAGTAATCCCCGCGAAGTCCTGAAGACG 577908 29 100.0 32 ............................. GTTGCGAAGCCTACGTCCAGATCGTAGAGATA 577969 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 578030 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 578091 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 578152 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 578213 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 578274 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 578335 29 96.6 32 .....A....................... GAATATAAAACCAGATTCCATATAGCCCTGTG 578396 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 578457 29 100.0 32 ............................. TACAGGACGCACTGGCTGCGAAGCCGTTCGCG 578518 29 100.0 32 ............................. TCGCTCTGTGTCATACGGTTATTAGCCCTGGA 578579 29 100.0 32 ............................. AATTTGCTCATAGAATTGAGACAGTAAACTTT 578640 29 100.0 32 ............................. CCGAAATGGATACCGCCGCGATTGAGTATTCG 578701 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 578762 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 578823 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 578884 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 578945 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 579006 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 579064 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 54 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGTG # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTCTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCTTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 198115-199371 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJDJ01000004.1 Klebsiella pneumoniae strain EuSCAPE_LU020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 198115 28 89.3 33 ...........ATG.............. CACCTGGCATATGCACGGTTTTCAGGAATTTTA 198176 28 89.3 33 ...........ATG.............. CTTCTTCCCCATAGAGGTGATGTTAAGCATTCC 198237 28 89.3 33 ...........ATG.............. TAGCGTGATCAATAGCATTGTCCAGGTGGGCGT 198298 28 89.3 33 ...........ATG.............. TGCCTGAAAAGTTTCGCCCACGCGGTCTGGATC 198359 28 89.3 33 ...........ATG.............. CGAAACCCAGATACCGGTAAGCCAGATTCTGGC 198420 28 100.0 33 ............................ CGGGCGATAAAAGCGTTTATCGAACGCTGTGAA 198481 28 100.0 33 ............................ CGGGCGATAAAAGCGTTTATCGAACGCTGTGAA 198542 28 100.0 33 ............................ TGATTGAAAAGCTGGCTGTGAACAAACAACGCG 198603 28 100.0 33 ............................ CCCAAAAATTTTGCAGATGTGGAAAGACATTAA 198664 28 100.0 33 ............................ CAAATTCGTCCGGGTCAGCCAGGACCATCAGCG 198725 28 100.0 33 ............................ CGGAAAGCAGCGGTGAGAAGGCGCAACATGCAG 198786 28 100.0 33 ............................ CGGCTTTTATATCGGGCCACTTTTTAGTGGAGG 198847 28 100.0 33 ............................ TTTAGCGCCGTTGACGCACTGGAAGCCATTCAG 198908 28 100.0 33 ............................ TCATCATCCAGGCGCTGCCCGGCGCGGTTTATC 198969 28 100.0 33 ............................ CTTGCCGCGCATCGGCAGTTATCCTGCCACCAC 199030 28 89.3 33 ..............T.......G.G... TCGCATTCCGCCTGTTTGTTAGCCTGAAATGGC G [199047] 199092 28 100.0 33 ............................ CGGAGTGCGCTCGCATACTCACCCTCGGCAGAT 199153 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA C [199158] 199215 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCGGGCATTCGTTCT 199284 27 85.7 33 ......A...T.T....-.......... TTGTGAGGGGTCTACCAGCATTGGCGTACTGGA 199344 28 67.9 0 ........T..A..T......C.TAGCA | ========== ====== ====== ====== ============================ ========================================= ================== 21 28 94.7 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTTGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : AATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAAATGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCTGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAAAATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTGGCTTGTTGGTGTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTACATCGA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //