Array 1 15112-13581 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCKY01000048.1 Yersinia pseudotuberculosis strain M207 NODE_48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15111 28 100.0 32 ............................ ATATGAAAAACGTTTTACAAGTGAAATTGCTA 15051 28 100.0 32 ............................ GACAGCACTAGCGATAGATTATTAAACGGCAC 14991 28 100.0 32 ............................ ATCTTCACTGCAGCTATAACGTATCCGTAGCA 14931 28 100.0 32 ............................ GGTCGACCAGCGCCGGGGACGTTTGGCGGAAG 14871 28 100.0 32 ............................ TTACCGGCATCATACCGGGCATGTATTTCATG 14811 28 100.0 32 ............................ AAGCGTTAGCTTCCGGGGTTCTTCGCGGGGAA 14751 28 100.0 32 ............................ GTTAGAGCAATTACAAAGGCATTAATTATTGG 14691 28 100.0 32 ............................ TGTTCACCGTGACGCTTGGTAAGCCAGTCGAT 14631 28 100.0 32 ............................ AGTTCCATATCAACGGATTCACATAACGCTTC 14571 28 96.4 32 A........................... AGAATATCCTTACGGTTGGTGTTGATGTGCCA 14511 28 100.0 32 ............................ ATGAAGTCAACTGACCGACAAAGCCGGGCGGG 14451 28 100.0 33 ............................ ACTTGCAGCGCATGAAGTATGCAAGAGAATTAA 14390 28 100.0 32 ............................ GCATCTTGCAGCGGGAGGAGGGGAAGAAGAGT 14330 28 100.0 32 ............................ ATAGCCACCACTTAATTATCATCATCAATCAA 14270 28 100.0 32 ............................ TATCGTTGATGATATTGTGATGAACGGTGGTT 14210 28 100.0 33 ............................ GCGATAATATTTTCATTAAGTTTCGCTATCCGG 14149 28 100.0 32 ............................ ATCAACCACACCATCGGCTGTGTGATGCTTAA 14089 28 100.0 33 ............................ ATTATCTGAGTAGATATCTTTAGTAAGAATACA 14028 28 100.0 32 ............................ ATATGAGAAACGTTTCACAAGTGAAATAGCTA 13968 28 100.0 32 ............................ CTTGGAATACAGATTATTGCTGGTACTGTCAA 13908 28 100.0 32 ............................ TATGGTAAAGCCAACTTATCCAGACATACCAC 13848 28 100.0 32 ............................ TATTTCGGAGGTGCTAAATAATGGCTCGTTAT 13788 28 100.0 32 ............................ ATATTCATCCAGCGGGACCGCTGATGTTTATT 13728 28 100.0 32 ............................ GGATTGATCGGGTGATTCTTCATGCGGCATCT 13668 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 13608 27 85.7 0 ...................A-.A.T... | C [13584] ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATTGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATCTTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : TTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8194-9724 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCKY01000053.1 Yersinia pseudotuberculosis strain M207 NODE_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 8194 28 100.0 32 ............................ AGCAATAATCTGTATTCCGAGGTTAGCCACAT 8254 28 100.0 32 ............................ CTGTGATAGCAATCCGTTGACTATAACGTCAG 8314 28 100.0 32 ............................ AAGGGTTCATTGGCAGAAGCACTTGCATTACA 8374 28 100.0 32 ............................ CAAGAAAAGACACGCCAAATATCTGAGCAGTA 8434 28 100.0 32 ............................ ACAGCCAATCTACTTCCGTTCTCTGAGATTGA 8494 28 100.0 32 ............................ AGACGAAGAGCCACGCCAACGTAAACGTAAGA 8554 28 100.0 32 ............................ TATCTCAGATGGCGAGCCTGTATCGCACTCAT 8614 28 100.0 32 ............................ TAATCATGGATGAGGTTGGAATAAAACTATCA 8674 28 100.0 32 ............................ AAGTAAGGCACAGAAGGTTGTCACAATGACAA 8734 28 100.0 32 ............................ AACACTAAGGGATTATTACCAGATACAGGTGA 8794 28 100.0 32 ............................ AAATTATCTATAAACATAAACTGACTTTGAAT 8854 28 100.0 32 ............................ AATTCGGTATCGGTAAATTCATCAAGTATTTC 8914 28 100.0 32 ............................ TACAGCGGGCCAACTATTAGTAGATAGAGTTA 8974 28 100.0 32 ............................ CCAGATAAAAACCTGATCACCCTCATCATCAT 9034 28 100.0 32 ............................ ACTTTAAAGTCGAGAATGTTTTCCCCGCTCCT 9094 28 100.0 32 ............................ CATTGAAATAATGGTTACTGGTAACGGACAAG 9154 28 100.0 32 ............................ AGAATAATCAACGCCATTAGGGTTTAAAGGTA 9214 28 100.0 32 ............................ CCCGTATTTTTGAGTGCCAGCTGCTTCCTGCA 9274 28 100.0 32 ............................ ATTTATCGCCTGACTTGACAATCATGACTTAA 9334 28 100.0 34 ............................ CCGATGGTCCGGCAATACCGATAACCACTTTTGA 9396 28 100.0 32 ............................ AACAACGCCGCAGACGCAACCAGTGCCAATAC 9456 28 100.0 32 ............................ CAAATGAGATTAAAGCATCAGTGCAGTACATG 9516 28 100.0 33 ............................ CCTGCCTGAATAGGGTGCATCAGCAAACCAAAT 9577 28 100.0 32 ............................ TCAAAAACCTGATGGCAGTGGCCCGGCAATAT 9637 28 100.0 32 ............................ TCAGGCTGGCGGCGAAATCACCACCTTTGCAT 9697 27 89.3 0 .....................CC.-... | T [9723] ========== ====== ====== ====== ============================ ================================== ================== 26 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12771-12919 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCKY01000067.1 Yersinia pseudotuberculosis strain M207 NODE_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12771 28 100.0 33 ............................ ACTTTCGGAGACAGTGATTCTACGACCGATGCA 12832 28 100.0 32 ............................ AAGCCAACGACGGATCTCTTCAACGGCAATGC 12892 28 89.3 0 ...........T............T.G. | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCCTTTAAACACCAGACAGCACAACAACCCAAGAGGTTAGTTACTGTCCGCGGACGGATAAGTCACAGTTTCCCCATTCAGGTTATATTTTATCAGGGATAATAGGTGAAATAGGGGGGAGGGGCTAATGGTAAAAAGCCTCTTATTGATCCAATATATAATAATTCAGATAAAACGCGCATCTATTAGGATATTTCAGACATTTATACAGGATATTTCTGATCTCCATCACAGGGGGACCTCATTAGATCACGTCAATATTCTTTTTTTAATTTACCTAATAACCTCATTTACTTAATAACCCAATTGACCTGAACCCTAAAAACGAAGCTATGGCAGAGTCATGCCCTGAGAGCGTTTCAGGGCGTTGGTACAGCAGATGATAAAGATCACAATAATAACTCATGGGGATTCTTAGCCTATTCACATCAGGGGCGTCATTTTTACCCTTTGGCGAAAGAGTTATTTTATAAACAGTTTGTTACCCGTATTATCTTACT # Right flank : AGGGTTACTGTCTGTGCGCCAGCGCGGCCCCAGCCTGCGCCTCCTGCTGGTAGGCCAACGCCACGACCAGCGACTGCACTAGACAGAGCGTGGCTGATTGAGATCGGAAGGCATCTACCTGAGCCTCTTTCACCACAAAACAGAGATCGCTGAACGTGGCGAGCGGGCTTATCTGGCTGTCGGTAATGACAATCTGCCGGGCACCCGCGCTAGCGGCTATTTCACTGACCATCACGGTCTCTTCGGCGTAAGGAGAGAAACTGATAGAAACCACGATATCGCGTGCTTTAATGCTGTTCACCTGCTCGCGCAACATCCCCCCGAGGCCATGAAGTTGCACTGGGCGACATTCTAAATGGCTGAGTGCGTAGGTCAGATAGGCGGCCACGCTGAACGAGCGGCGCAGGCCCACCACATAAATGGTATCGGCCTGAGCAAGCAGTTCCACCGCACGTTGCAGCATCTCTGGTTCAGTACGTGCCGCCAACTGCTGTAGTGCC # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //