Array 1 249331-251675 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEPVP010000187.1 Klebsiella pneumoniae strain k60 NODE_3_length_431599_cov_35.911040, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 249331 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 249392 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 249453 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 249514 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 249576 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 249637 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 249698 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 249759 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 249820 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 249881 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 249942 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 250003 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 250064 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 250125 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 250186 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 250247 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 250308 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 250369 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 250430 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 250491 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 250552 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 250613 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 250674 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 250735 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 250796 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 250857 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 250918 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 250979 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 251040 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 251101 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 251162 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 251223 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 251284 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 251345 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 251406 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 251467 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 251528 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 251589 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 251647 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1459-456 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEPVP010000001.1 Klebsiella pneumoniae strain k60 NODE_88_length_3972_cov_38.251235, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1458 29 100.0 32 ............................. CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 1397 29 100.0 32 ............................. CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 1336 29 96.6 32 ............A................ AGCAACGTTTCCGGATTATATGGCTGGAACGT 1275 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 1214 29 100.0 32 ............................. TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA 1153 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 1092 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 1031 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 970 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 909 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 848 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 787 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 726 28 93.1 32 ..........-..C............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 666 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 605 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 544 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 483 28 82.8 0 ............CAC........-....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 94.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTGCATACCGCGAGGTATGGGGCGAAGCGTTGACA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //