Array 1 44027-44590 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVBN01000013.1 Granulicatella sp. 572.rep2_STHE 327_44590_1377965_88+,...,175_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 44027 36 100.0 30 .................................... TCGCAATTCCTCAGGAGTTCGCTGGGAGTT 44093 36 100.0 30 .................................... TCGAATGCTTTTGTTAAAGGCAAGGATGGA 44159 36 100.0 30 .................................... ACCACACTACTAATCTTGGCGGATGCAGTG 44225 36 100.0 30 .................................... TTGGAATTTATTCATTTTATTCACTCCTTG 44291 36 100.0 30 .................................... GAAGAAATCGAAAATGCTGTTGAAAACAAC 44357 36 100.0 30 .................................... AAACAGACGAAGAAGAAGCTAAAACCATTG 44423 36 100.0 30 .................................... GTTGAAAGATAAAGCGTATCAGTTAGCAAT 44489 36 100.0 30 .................................... TCTAGTATCCTTTCTACGTACCCGTCCATT 44555 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC # Left flank : TAAAGCAGTGCAGTCTGATTTATTAGACCAGCTGAACGAGAATATCGAAATAAAAAATCAGTTAGATTTGATGCTTACGCAGATCACAAGCATTTTAGGTTCTCAATGCATAGAGAGTGAGTTGAATTTAACGTATAGTGAACTTAAGATTGAAAAAATTATTTCTGCATTAGAAGTTCGTATAGACTCGGAGTCGAATACGTTATTTGAGCAACTCTTTGAAGTACTTCAAATTTTCAAGTATCTTGTAAAGAAGAAACTACTTATCTTTATTAATGTTGCATCTTACTTTAGTGCGAAAGAATTAGATGCTATAAAAGAGTTTATTGAGTTGAATCAAATAAATGTATTATTTATTGAGCCAAGAGGTGTGTTTAACTATCCGCAGTATACTCTTGATGAAGATTTTATATTAATCAAAAATTTGTAAAAATAGTGAAAATCATTCAAATCAGTAGTCCGGCTGAGACGAGCAGCGCGATTACGAAACCTTCTGCGAG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 124639-122558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVBN01000020.1 Granulicatella sp. 572.rep2_STHE 334_124638_3761669_127+,...,175+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 124638 36 100.0 30 .................................... TCGAATGCTTTTGTTAAAGGCAAGGATGGA 124572 36 100.0 30 .................................... ACCACACTACTAATCTTGGCGGATGCAGTG 124506 36 100.0 30 .................................... TTGGAATTTATTCATTTTATTCACTCCTTG 124440 36 100.0 30 .................................... GAAGAAATCGAAAATGCTGTTGAAAACAAC 124374 36 100.0 30 .................................... AAACAGACGAAGAAGAAGCTAAAACCATTG 124308 36 100.0 30 .................................... GTTGAAAGATAAAGCGTATCAGTTAGCAAT 124242 36 100.0 30 .................................... TCTAGTATCCTTTCTACGTACCCGTCCATT 124176 36 100.0 30 .................................... CGAGAATATAATTACTAAATAAGTAGCCAC 124110 36 100.0 30 .................................... TATCGTACTCGTTCATACGCAGGTATGGTT 124044 36 100.0 30 .................................... CAAGAAACAATTCATCATTGATACAAACAT 123978 36 100.0 30 .................................... CCATCATGTATGAACGTGTAGATGGGCAAT 123912 36 100.0 29 .................................... TTCAAAACTGTCGTGAACGGAATCATCGG 123847 36 100.0 30 .................................... ATGAAGTATTTTATACCTTACCTAATGACC 123781 36 100.0 30 .................................... CCCAGAAGCTGCAAGCTCTGGTGAGCAAGC 123715 36 100.0 30 .................................... GGCGGAGTTGGGGTTCTTTGAAAATGATGC 123649 36 100.0 30 .................................... AAGCTGCAGAACCAGTCCAGGAAGCTGCGC 123583 36 100.0 30 .................................... TGAAGCTTTAATTTTGTAATTTTTGAGTTA 123517 36 100.0 30 .................................... TTCGAAACATCCCAAGCGGATTCTTCAATG 123451 36 100.0 30 .................................... AATACTTGGTTCAAGGATGATGAAGGCTTT 123385 36 100.0 30 .................................... TCGTTGGAATAATCGCATTTATGCACTTGT 123319 36 100.0 30 .................................... GAAAAAGCTGAGGGCAAAGATGATGTATGG 123253 36 100.0 30 .................................... GTTTTTATCCTTTTATTTGACGATATAACG 123187 36 100.0 30 .................................... AGAAGGTGCTGCTATCCCAGTTGAGCAATT 123121 36 100.0 30 .................................... GAAACTTGAAATCAAAGAGTTGACCGACTC 123055 36 100.0 30 .................................... TAACTATATCATAGATTATTTAGTATCGTT 122989 36 100.0 30 .................................... TTACAAGGTAGTGAGCGATAGAGGTTATAC 122923 36 100.0 30 .................................... CATGTTTGAACAAGATTTGGATACTGGAAT 122857 36 100.0 30 .................................... TAATCCCCTCAATCACTAATGGACTTACAT 122791 36 100.0 30 .................................... AGAATCATTGAGGTTAACGTTAGAAGATGT 122725 36 100.0 30 .................................... TAAATCCTTCAGACTGTTTGGAATAGAGTC 122659 36 100.0 30 .................................... TTGGACGAGAACCTTGTAGGCTTTTGCGTT 122593 36 97.2 0 ...............................C.... | ========== ====== ====== ====== ==================================== ============================== ================== 32 36 99.9 30 GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC # Left flank : | # Right flank : GCTTCCGTGTGACATTTGGTTGTTAAAGCTATCGTAAGCCTAAAGTTTCTGGGAATTTTATTTGATGAATACAAATATATAGATAAAAAATAACTCGGAGGAAGATTATGGGACGTAAAAGTAAGTTTTATGATGCACTAATCGAAGAAGTAGTTTATAATTCGGTGTCAGATATTTGGGAGGAAGCAGTTGAAGAGTGGGAAATTTATGATGTTAAGGAGGATGAAACTCTCGAAACATTATGTATTTGTGGACATGATCACCTTAGATATCTTTTTACAATTGAAAATAAATTGAATGGAAGAGTTTTATATCCGATTGGAAGCTCGTGTATTAAAAAGTTTGGACGCAGTGACTTAAAACATGAAGTTGAAGTGCAGATGCAATTGTTCCAATTATTACATGCTGTAGAGCAAAGAAGATTTCTAGAGTTGTCTCCAGAATACTTTAGCCGAAGACTATTTGCGTATTTATTTGAAATGGGTGCGTTTAAACCTAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 1027-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVBN01000025.1 Granulicatella sp. 572.rep2_STHE 340_1026_35814_175+,94+,53_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1026 36 100.0 30 .................................... AAAAGTTTAAAAATATCAAATGAAGTTTTA 960 36 100.0 30 .................................... GATGAGTCCAAATGACTTCCCAGCTTTAGA 894 36 100.0 30 .................................... GAAGAGAAGGATATTACAGATAAAGAAGAA 828 36 100.0 30 .................................... AAGCTATTTGCAAAGTCACCGATGATTACA 762 36 100.0 30 .................................... CATGTTAGACAACTTAAAACTTGGTTACGG 696 36 100.0 30 .................................... TTTACCCTGTAGCTCTTGATTGCGGGGTGG 630 36 100.0 30 .................................... ACATTTTCTTGCATAATCCATCTGTTGAAA 564 36 100.0 30 .................................... AATCGAACCTTAACATAAACGCCCTTCCAC 498 36 100.0 30 .................................... TCGAATGCTTTTGTTAAAGGCAAGGATGGA 432 36 100.0 30 .................................... ACCACACTACTAATCTTGGCGGATGCAGTG 366 36 100.0 30 .................................... TTGGAATTTATTCATTTTATTCACTCCTTG 300 36 100.0 30 .................................... GAAGAAATCGAAAATGCTGTTGAAAACAAC 234 36 100.0 30 .................................... AAACAGACGAAGAAGAAGCTAAAACCATTG 168 36 100.0 30 .................................... GTTGAAAGATAAAGCGTATCAGTTAGCAAT 102 36 100.0 30 .................................... TCTAGTATCCTTTCTACGTACCCGTCCATT 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 100.0 30 GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC # Left flank : | # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 1-1158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVBN01000026.1 Granulicatella sp. 572.rep2_STHE 341_1158_37304_175_,1+,53+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... TCGAATGCTTTTGTTAAAGGCAAGGATGGA 67 36 100.0 30 .................................... ACCACACTACTAATCTTGGCGGATGCAGTG 133 36 100.0 30 .................................... TTGGAATTTATTCATTTTATTCACTCCTTG 199 36 100.0 30 .................................... GAAGAAATCGAAAATGCTGTTGAAAACAAC 265 36 100.0 30 .................................... AAACAGACGAAGAAGAAGCTAAAACCATTG 331 36 100.0 30 .................................... GTTGAAAGATAAAGCGTATCAGTTAGCAAT 397 36 100.0 30 .................................... TCTAGTATCCTTTCTACGTACCCGTCCATT 463 36 100.0 30 .................................... GTTCCTGTTAGTCCTGTTTCCAGAACGAAG 529 36 100.0 30 .................................... CGAGGGGTTATTAGAAATCTTGAAACAAGC 595 36 100.0 30 .................................... AAAGAAGGATGGATTCAAGATTCAGTTGGA 661 36 100.0 30 .................................... TCCCAATCCTTAGCTTTTACTGACACTATA 727 36 100.0 30 .................................... TAATAACGACCGTTTAGAGTTCTTAGACGG 793 36 100.0 30 .................................... GAATGAAAGAAACTACATGCTGTTTCTCTT 859 36 100.0 30 .................................... CGGCTCTATGGGCTGGGAACAAATCGGTAA 925 36 100.0 30 .................................... TAACTATTTCATCTATGGTGAAACAATGAG 991 36 100.0 30 .................................... AAACGTCCTTCTAACATAATATGGTTCAAG 1057 36 100.0 30 .................................... AAAAGTTTAAAAATATCAAATGAAGTTTTA 1123 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 31 GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //