Array 1 264478-264993 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADET01000013.1 Gardnerella vaginalis 00703Bmash ctg00017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 264478 28 100.0 33 ............................ TACTCTCATCGTAGTCCTAACCATGTCTGGCCG 264539 28 100.0 33 ............................ CATCAGATACAAAATAAGCAATATTCATTGCGA 264600 28 100.0 33 ............................ TAAACGCGCGGACGTCCTACGAGTTTTACATTG 264661 28 100.0 33 ............................ CAACACAACACTGCGAGTGGATTCGGTCAAGTA 264722 28 100.0 33 ............................ CTGTGGGATTCTTTTCGCATTCTCCCCTAGTAT 264783 28 100.0 33 ............................ TATCTCGTGCGCTCTAGGCGCGCCGCCTTAGAA 264844 28 100.0 33 ............................ TGGAAGCTAGCCTATAAGGCATTAGATGACAAA 264905 28 100.0 33 ............................ CATTATGGCACAACTAGAACATGAGAAAGGCGG 264966 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 33 GTCTTTCCCGCATACGCGGGGGTGATCC # Left flank : TTTATTCCTAATAAAATTATTGAGCTAACTGGTATTACAACTAATATGCTTGAGTCTTATGGTGTAGGATTAGATTTAGCATTAAGAGAATTCATTGATTTTATCGGAAAATTACCGATACTTGGATACAATATACAGTTTGATATGTCATTTTTGAATTCTGCTTTATCTTCATTAGGTGAAAGATTTGACGATTCTCTTTTAATTAATAAAATTTTTGATATCTCTCGTTTTGTAAAGAAAGAAAAGAAATTTTTAAAAAATTACCAGCTAAAGACGGTGCTGCACGAATACAACATTTCTGAATCCGTTCCGCATAGAGCTCTTCTGGACGCTAGACTAACAGCGCATCTTGTTTTTAATTTGAAAGGATTGTTAAAATTTATTTCATAAAAATAAAATACTGTTGTACCATGTTCTGTGATAGGTTGAATTTGAAAAGTAAATGAAATTTGACTGTTTCTGTTATGGAAATGGCCATTTTTATTGGGATTTTAAGT # Right flank : TCACACTGAGGTGTGAAGTGGCCGCAAAGAAGGTCTTTCCCGCATACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 378-44 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADET01000011.1 Gardnerella vaginalis 00703Bmash ctg00013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 377 29 89.7 32 A.T.....T.................... TCCCGTCTTTTGTAATTGCCCTTAAAGGCACT 316 29 100.0 32 ............................. CAGAATACTTTGTGAATGCTGTAAAAGACTAT 255 29 100.0 32 ............................. TATTCATCTTCAGGAAACTTAGAAGGTATTAA 194 29 100.0 32 ............................. CTAAAAAAATTTTTGTTCACCCCCTTGCTTAT 133 29 100.0 32 ............................. ATTGAGGCTAGGGGTTCTAGCCACTACCATTG 72 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GGGATCACCCCCGCGTATGCGGGAAAGAC # Left flank : TGATTTAATATAAAATTTATTCTTTATTCATCTGGGGAATGAACTTTACGCGGGACTCCTAAATCATCCGCTATATCGTCATAGTCATCGCCGCATTCATAAGAATCTAGCAAATTATAAGCTTCAATTAGCAACTCTTTAGGTGCACTCTTGTGTAGCCACGCGTCTACTAAATAATAATCAATCGCAATCGATGGTTCGCCTGCTCTAATAGCACTATTGGCTGCTTCTTTAGAGAGCTTATCCATGTTAGGTTCTGCATATGGACGGAGTTTCTCAACCATGTCATAACAAATTTTCATCATATCCATTAGCTTTTCACTCCTCTCTTATTTTCCACAACTGAGAACAAGGTATTAACGCGCCACCCTTTTTTCTTTTCTCGCTCAATCGTTGCAAAAAACTGAAAAACGTGGGGTGCTCCTCAGACTGATGTTCCAGTCTTGAAAGCTGGTTGCCGAGGTCCCCACGCTGGTTATACTGTATCACAATATTTATAT # Right flank : CTGTGGTTTGCTAGGAGGCGTGAGATGCAAAATAGGATCACCCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGATCACCCCCGCGTATGCGGGAAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //