Array 1 242-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIB01000091.1 Halomonas sp. HAL1 contig00104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 241 29 100.0 33 ............................. GCGAGCAATACGCCATCGTAGACATCGGTATGC 179 29 100.0 32 ............................. CTCAACCACACGGCCGACTATTACACGCCCTT 118 29 100.0 32 ............................. AGTCGGCCCGCCTACATGCAGAGCGCTTGGCT G [101] 56 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 100.0 33 CCGATCCCCGCACGAGCGGGGATGAACCG # Left flank : ATGAACCGTCACCGCGCCAGCCGTGTTCATTCAGCAACG # Right flank : GCCAACGATGTTGCCGGGCACAGTGCCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCACGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGATCCCCGCACGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 221-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIB01000092.1 Halomonas sp. HAL1 contig00107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 220 29 100.0 33 ............................. ATGATGGGGTGAAAGAGGCGCTAAAAGCGTCTT 158 29 100.0 32 ............................. TTCTCGCGCATTAGCTCGGCTTGCATTTCGAT C [153] 96 29 100.0 32 ............................. GCGCAAGCGTTGACGTAATGGTTGAGGCAGTG 35 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 100.0 33 CCGATCCCCGCACGAGCGGGGATGAACCG # Left flank : ATGAACCGTTACCGTTACAACGGTACGTTCTAGGGTTTC # Right flank : GGTGATG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCACGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGATCCCCGCACGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26659-27114 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIB01000054.1 Halomonas sp. HAL1 contig00056, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26659 29 100.0 32 ............................. ACCAGCTTTTTTACACGCATCACGCCAAGCAG 26720 29 100.0 32 ............................. GCCCTTATCGACGCTAGTTACACACTGCGCGC 26781 29 100.0 32 ............................. TTTTCAGTAGTTTTACACAAATGATCAAGATG 26842 29 100.0 32 ............................. GCATGTTAGGGCTTGGCGCCGGTGGCCAACAA 26903 29 100.0 32 ............................. CGTGCTGTTGCCCTACCAGCAGCGTTGGGTAA 26964 29 100.0 32 ............................. CCTACCAAGCGGCTGCCAGCCAGATCGAAGAG 27025 29 100.0 32 ............................. TTAATAAGATCCACATAACGCGGATGACCATC 27086 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 CCGATCCCCGCACGAGCGGGGATGAACCG # Left flank : GGTGATATTCAGCCGCCGCCACCAGCACCTGATGCAGTACCGCCTGCGATTCCCGAACCCCCTTCGGTTGGCGATGCCGGGCATAGGAGCGGATAAATGGCAATGCTCGTGGTAATTACAGAAGCTGTACCACCGCGCCTACGCGGCAGGTTAGCAGTGTGGCTCTTGGAAATTAGAGCCGGTGTTTACGTTGGCGACGTTAGCAGGCGCATTCGCGAAATGATCTGGGAGCAGGTGGAAGCCCTGGCAGAAGATGGCAACGTGGCCATGGCCTGGGCCAGCAACCATGAATCCGGCTTTGAATTTCAAACCTATGGTGAAAACCGCCGAGAACCCGTCGACCATGACGGGTTACGTTTGGTGCGCTTTTCGCCACCACAAGTTAACTAGCTGATTTTATTTGATCTTTAATAATTTAAAGTGGTTAAAAAGTAAGCAAAATAGCTGGTAGAATTTTTATCTGCTATTTTCTTCTTGTAGATCAAATATCTACAACAAGT # Right flank : CTTCATCTAATCTTATTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCACGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGATCCCCGCACGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41-435 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIB01000022.1 Halomonas sp. HAL1 contig00022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41 29 96.6 32 ............................A GAATTGGCACTGCCTGTACGACGCGGAAGACC 102 29 100.0 32 ............................. CAAGGCCAGCAGCAGGCACCACAGCAGAACAA 163 29 100.0 32 ............................. ATCAACCAGCAGCTACGAAAAGCGACTGACCA 224 29 100.0 32 ............................. ACGCTTTCAACAATGGCGACATTAATGAGCAG 285 29 100.0 32 ............................. CGCGGGGATAATGCCCAGGTCGTCAATAAACG 346 29 100.0 32 ............................. TGCTTTCGGCTTCGCCTACAGCCTGAAAACCA 407 29 69.0 0 .A.C.........TC...A..C.T...AT | ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.1 32 CCGATCCCCGCACGAGCGGGGATGAACCG # Left flank : ATGAACCGACAAGGAGCTGTTTCAAGACTTCTGGGAAGTCC # Right flank : TGATAGCTGCCGCCCAGGCAGCCTAAAGAGCCGCGAGCTAAAGCTACCTTCTACCAGTGCATCTATCAAGCTGGTAGAGATACTCCCGCTCTGAAGAATAACGAGGAACCACTAAAAAGCCATCACGTTGGATGGCCTCTGTTACTGAAATCAGGAACGCGCTAACGAGTTAATCTTCTTTCGGCGGTGTTTCCATGGCGCGTTTGTCGTCGGGGACTCTGACGATGTGGCCGACATCGAGTTTACTGTGGCTTTGGTGGCGGCCGCCTTTGGCGTCGATGATCGCGACAACTTCGCCAATGCTTACTGCGTCATCTTCGCGGTATGCTTCTACCTTGATGCGTACCATGGCGCCTTGGTAGCGGGCAGAAATAATGTCGCCTGGGTCGGGGGCGTTATGGTCGGGGTCGTTTTTAAAGTACTCCGCTACGCTGGCGCTACCTGGGTTATCCCATTCTACATGCTGATGCATCGTCGTCTTCCTTGTCACGTTGGATGTC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCACGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGATCCCCGCACGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 365-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIB01000094.1 Halomonas sp. HAL1 contig00111, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 364 29 100.0 32 ............................. AGGATCGACATGAAAACATTCGATGCAAATCC 303 29 100.0 32 ............................. TGGAAGCAGCGCCCAGCTGTTTTAAAGTATCG 242 29 100.0 32 ............................. TCTGCGGCTATATCATCTTGGCGCGCACGCAA 181 29 100.0 32 ............................. CGATACCATTGGCGCTCAATCGGAAATGATCG 120 29 100.0 32 ............................. ATGTATTAAACAGCAAGCTAAAAGAGCAAAAG 59 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 CCGATCCCCGCACGAGCGGGGATGAACCG # Left flank : GATGAACCGATGCGCCCGACGTTTCTATCACAAATTCAGG # Right flank : GTCACCGTCCGCGACATCGTCACCACCATCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCACGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGATCCCCGCACGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 336-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIB01000093.1 Halomonas sp. HAL1 contig00109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 335 28 89.7 91 -A..........................C GCGCGCGTGAAGCGCCGCTAAGCGTCGTGGAATCCGATCCCCGCACGAGCGATGAACCGCTGATAGACGCAGCAACACAGCGTACAGGGTC G,C [313,326] 214 29 100.0 31 ............................. CAACATGCCTAAAACGGGAGACTATAACGTA 154 29 100.0 32 ............................. CAATTGGTATGCCTGCGCGTGATGCCATTCGT 93 29 100.0 32 ............................. TTGAAATGCCTGCTAATCCAGCGGGCCGTAAA 32 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =========================================================================================== ================== 5 29 97.9 47 CCGATCCCCGCACGAGCGGGGATGAACCG # Left flank : | # Right flank : GCAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCACGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGATCCCCGCACGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //