Array 1 6230-6870 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASQ01000020.1 Gilliamella apis strain A-TSA3 NODE_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6230 29 100.0 32 ............................. GGGTATGTGCAGTCAAATTAAAGGATTGCAAC 6291 29 100.0 32 ............................. GGAGACTTATCCGAACTTGTTGAATTTGGTGA 6352 29 100.0 32 ............................. ATCAATAAAAAAATCGGCAGGGCTTCTATAGC 6413 29 100.0 32 ............................. CCACGAAAACCGGGGATTAAACCTGTCAATAA 6474 29 100.0 33 ............................. CTACCGCCTTTGTGAAAAATAAAAGCGCCACCC 6536 29 100.0 32 ............................. TTATTAATAACTAATTTATAATTTATATGATA 6597 29 100.0 32 ............................. AAAAACATTAGAGCCTTTACTTAAAGCGTTAG 6658 29 100.0 32 ............................. CCTTTTTACGTGATGATGGTAGTAATAATACG 6719 29 100.0 32 ............................. ATTATGACAAGCGACTTGAAATAAAGAAACAA 6780 29 100.0 33 ............................. GACTAAATAATGGCAAAATTTAAATTAGTTGCA 6842 29 93.1 0 ..........................A.T | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.4 32 GAGTTCCCTGTAGGTACAGGGATATACCG # Left flank : CTTATCGAAGAAGTTTTGTCTGCTGGTGGTATTGAACCGCCACCAGCTCCAGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTCTTGCTGACAGTGGCTTTAGGAGTCGCTAAAAATGAGTATGTGTGTTGTAGTAACTGAAAATGTCCCGCCTAGGTTACGAGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGGGTTTACATCGGTGATATATCAAGACCAATAAGAGAAATGCTATGGCAACAAATCACTAAACTTGCTGAGGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACTGAGTCAGGATTTGACTTTCAAACTTATGGTGCAAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGGTTGGTCTCTTTTTTACCTATTGAAAATCAATAAGTTAATGTTCTTTAAAAATTAGGAAAATTTGGTAGATTTTAACTAACTAAAAAATATTATATAAAACAATTATCTATATTTAGA # Right flank : TTTATTAGCTAATAAAATTACATCCAAATGGTTTTAAATTATCTACCTTTATGTGAGTAGATGGTATACACTCCTCAATATTTTTTACAAGGCTGTAATGATAGCGTTTTATAAAAATAAAAACTAATAATCATATATATCGATAATATGAAATAGAGGTTTTTTAGTTAAACTAAAATAATTATTAAAAATAGCGTACAATACTCAACATTAATCGTAAATTCATTATCAATCATTTAGGAATTTTGTATGACAGGTAAATTTATTGTCATCGAAGGTTTAGAAGGTGCAGGCAAAACAACAGCCATCAATACTGTTGCTCGTATTTTAAAACAACATCATATTTCTGATTTACAATTTACCCGTGAACCTGGCGGTACACCAATTGCAGAAGCATTACGAAATATTATTAAAAATGGTTTAGATAATGAGCCGCTAACAGATAAAGCGGAATTGCTAATGCTTTATGCTGCTCGTATTCAATTGGTTGATAATGTAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTAGGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 689-481 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASQ01000019.1 Gilliamella apis strain A-TSA3 NODE_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 688 28 100.0 32 ............................ CGCTGAGACAATAAGAAAACATATCAAAAATG 628 28 100.0 32 ............................ ATGTTGTAGGTTTATAACCTGCGGATGGAGTA 568 28 96.4 32 ........T................... ACTTGAGTGGATGAATGGCGCATTTAATCGTG 508 28 82.1 0 .....................AAGA..T | ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.6 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : GGATAAGAAAAATAGTGTTAGGGCGATAAAAAGCGATTTTGGGCGCGACATTCGCAACGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCAGTTGCGTGGTCGCCGCGTGAGATGGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCACAAAACAACAAAACGTCCGAAACTCAAACAACCAAAAAATAAAGAACTAAAAAATTTTGAGGAAAGGGGTTTTTGAAAATTAAATTCCTACTTATTGCTAACCCTTTTTTTTGACTTAAAATAAAATTTTTAAAAATCAATATGTTGAAAAACCTCTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTACCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TATATAAGTGGCGGTATAATTAAGAAATACACTGCTTATTGAGTAGGTTAAAAATGGTGATTTTTTAAGAGGGGATAAAGGGTATATTATTTCTAATAAACAGCAAATAACCGATGCTATTTTCGAGCTATCAGTGTTCATCTTTACAAAAGTTAACAATTAAACCGCCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTATGCCATTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACACAACACACAACACACAACCTGCCCAACCTATAATTTCACCTTTCTAAAGTTAAGCTCACACCGTTTATTATTTCACTGTTGTTTATTATTTCAGCAATTTCCAAAATTTCCGAAATTTCGGCAAAATTTTTCAAAATTCCTTGGTTTCGCCTGTTTATCTC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.40,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5540-5213 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASQ01000019.1 Gilliamella apis strain A-TSA3 NODE_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5539 28 100.0 32 ............................ TAAATCATTAGAGGAGGCGCTAATGGATAATG 5479 28 100.0 32 ............................ GTTGAAAGAAACGCTACCGGTAGCGCCTGAGG 5419 28 100.0 32 ............................ GAGTTGGTACAAAACGATGACGATTTTAAAGC 5359 28 100.0 32 ............................ AGACGTCACCACGTTTCTTGATCGACATTTTT 5299 28 96.4 32 ....................T....... AGCTGATATTTTCAGGATCTTTAATGGGCATG 5239 27 92.9 0 ....................-.A..... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.2 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : TTAGTTCTTAGGTATTGAAGCTGAGGATAAGAAAAATAACGTTAGGGCAATAAAAACGATTTTGTGGCGTGACATCCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAACAGCGAACGAAGGCGGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAATAACCGCAAAACAACAAACGTCCGAAACTCAAACAACTAAAAAATAAGGAACTAAAAAACTAAAAAACTTGAGGAGAGGGGTTTTTGAAACTTATAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTACCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TATATAAGTGGCGGTATAATCAAGAAATACACTGCTTATGGAGTGGGTTAAAAATGGTGATTTTTTAAGAAGGGATAAAGGGTCTATTATTTCTAATAAACAGCAAATAATCGATGCTCTTTTCGAGCTATTAGTGTTCTTCTTTACAAATGTTAACAATTAAACAGTTAAAATAAGTTGCATCGAGTTTTTTCAATTACTATAATTTTTCCACTATATTTATATAAATGGATAGATTTTATACTTTTTAGTATAAAATTGTAAATAAATCATTAATTTAATTGACAGGAATGTCGGATATGTGTTATAATTTAAAACACCAAACACCAAACACCAAACCTGCCCAACCCATAATTTAACCTTTCTAAAGTTAAGCTCACACCGTTTATTATTTAATCGCAGTTTATTTTTTCAACAAATTCGGCAAAAGTTTTCAAAATTTCTTAATTTAGCCTTTTTATTTCGGCCGATGGTTTTGGTATTAACCATGGTTGTTTTAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3894-3686 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASQ01000025.1 Gilliamella apis strain A-TSA3 NODE_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3893 28 100.0 32 ............................ ATTCGGTCAGTTTGCCTAACATTACAGCCGAC 3833 28 100.0 32 ............................ TCTGAGCCGAGGTTGGTGACCGGCAGCGGTAC 3773 28 100.0 32 ............................ ATAAATAAGTGTTTCGAAATACCCATTAATAG 3713 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GCTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : GTTTTAAAACTAAAATTAGCTTGCTATAAACATAAACGTTTATTTTGGCAAATAAGTTTAGTGCTTCCTATTTAGCGACATCCGCAAAGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGAAGTTTGCCAAGGAGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTTGTAAAGAGGGTTGGCGGCAACCCTCTTAACTCGGACGTATTCACCGCATAGAACTAGCCACCAAACAACAAACGTCCGAAACTCAAACAATCCAAAAAATAAAGAACCAAAAAATTTTGAGGAAAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAATGCATTAAAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTGCCAACAACATTTATAGTATATCCGGCTCTA # Right flank : TAATATTGTATAAATTAAAAATCCAGTAGCTCAGGGTTAATACCTAGTGCGCTAGCTATTTTAATACGTGTTGCTTTCCTTAATTTTTGACTTTTTTCATATTGAGAATATGCAGATTGACTGATACCGATTTTATTGGCAACTTCAACTTGAGATAATTTTAGATATTCTCGCCATGCTTGAACTGGTGAATAATTATTATCAAAAACCAGATTAACAACTTCGTTGGGCACACCAGTATCAGTATTAATTTGTTTAATATTCGCTAATTCTAAATATTGTGTATAAGGCATAACCACAAACTGTGGTTGCCCTTGTTCATTATTAATAAACTGTATGTTATTAGTAAGTGCGTTCATCTCGTTTTTTCACCTCTTCGATAGAAACAATATGAATAATGCCATCAAAATTAAAAAACACTCGATAATTTCCAACTCTTAATCTACTGATATTTGTAGTTAGTCAGAGATTTTACATTAATGCAATTAGGCATGTTTGAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 18149-18356 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASQ01000003.1 Gilliamella apis strain A-TSA3 NODE_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 18149 28 92.9 32 ...T...G.................... TACACAGACAAATTTAATAATATTCACGAGGC 18209 28 100.0 32 ............................ GATTTCACAAGAACAACGCGAATTTTTTACTC 18269 28 100.0 32 ............................ AGCATTAATAATTTGTGATGCGTTTTTTATCA 18329 28 89.3 0 ............A...........A..T | ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : CCCTGCCAAGGCAATGGCATTGACGTTAACGAAGTGGGTGTTAAAAAACGATTTTGTGGTGCGACATTGGCAATGTGCTGACAACTGAGAGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGTTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAAAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCGCAAAACAACAAACGTCCGAAACTCAAACAACCCAAAAAATTTTGAGGAAAGGGGTTTTTGAAATCTAAAAACTTCCTATTACTAACCCTTTTTTTTGACTTAAAATAAAGTATTTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TTAATTAAAATTATAACACTCGAAATCCACCAAACTAAAAAAGTTTAGCAAAGGAGTTTTTTAGGTGAATAAATTCACCACATGTTATAATTATGTTTAATTATAATTAACTCTGTAAATATGATGAATAATAGTACAATTGATAACCAATTAAATGAAAAAATGGTGCTTATTTTCAAAGCATTATCTGATCCGGTTAGAATAGAAATCATTAAATATTTAAAAAGTATAGAAACAGAGGTTATCTGTGGTGAAATTGGTCAAGCAGTTGGTATTAGTAAACCCTCAGGAACTTATCATTTTAGGTTATTACAACAAGCAGAATTAATTAATGTAAGAAAGAGTGCTAGGGAAAAATATGTATGGCTTAATAAATCAACATTTGATAAATATGTTACCGGGTTTTTTGATAATCTTTAAAATACTCAAATATTGATTTATTGTTGAATTTATTGTTTTGATTTTATCAAATATTATTTTTTATCCCTTGTAGTTAACCT # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7908-6903 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASQ01000031.1 Gilliamella apis strain A-TSA3 NODE_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7907 29 100.0 32 ............................. TAAACAGTTTTACCGCCCTGTTTAACCGCTGT 7846 29 100.0 32 ............................. CAATTATTTTTTTCATGTTTTATTCCTGTTTA 7785 29 100.0 32 ............................. CACCGAGAGCAGCCGCTTTAATAGTAAGTGGC 7724 29 96.6 32 ............................A TACTGAAGCTCATAACGATGCTCACACATAAC 7663 29 100.0 32 ............................. TTTTTAATCACCACCAACATGCCAATATTGGA 7602 29 100.0 32 ............................. CTATCAATATCAATATCGTTCCATTCTAAACC 7541 29 100.0 32 ............................. GCTGGCGACAAGGTGATGGAACTTTATGGAAA 7480 29 100.0 32 ............................. TAAAATCTATTGAACATAATGGCGACCTATAC 7419 29 100.0 32 ............................. TTAATAAAATCATTCGGTGACGGTATAGTTAA 7358 29 100.0 32 ............................. CTAATTGCCGATGAGGTTTTGCCCCGTGTGCC 7297 29 100.0 32 ............................. CAGAAGTCGAGGCTAAAACAAACTATCTAGGT 7236 29 100.0 32 ............................. CTAATCCATCATTAGGTCATACGTTTACCGAT 7175 29 100.0 32 ............................. CTGGTTGTCTAGTTGTAACTAAAATGAAAGCA 7114 29 100.0 32 ............................. AATTTAACTTTTTCTCCCACATTGAGATTATT 7053 29 100.0 32 ............................. ATAAATACAATATCAATTTATCGGATTCTGAC 6992 29 100.0 32 ............................. GAACAAAAGTTAATCCCTTGGATATAGTTAGT 6931 29 86.2 0 .....................C..TTG.. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.0 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : TTCAACGATGATGGTGAACCAACCAGCACAGCCGGCCGCCCTATTCTATCGGCCATTGAAGGTCAAGATTGTGATCAGGTGGTGGTGGTAGTCACCCGCTACTTTGGCGGTATCAAATTAGGTACCGGCGGATTAATCCGCGCTTATGGGGGCTCAGCTAGCCACTGCTTACAACAAGCTGAATTAATCGAACTTATTGCTAGAACATCATTACAATTTCATTGCTATTACAATGAATGGCCAATTATTGAAAACCGCTTAAAAGAACTAGATGCAGTCATTGAACAACAAAATTTTGATGCTGAAGGTGTCAAAGCGACTATTGCTATCACACAAGACAATTTACTAACCCTTAAAAAAAATATTAGCGATATTACTCGCGGTAGAGTGGTTATCAAGACTTAAAACACCTGTGTAAATATCCATCCAAATACAGCAAAAAAATTGGTAGAAATTGTAGACTGCATATTTTAATTATAAAACAAACGGTTATAATTAGA # Right flank : TTCCCTGTGTGTACAGGAATTAACTTCAAATTCAAACAAACCACCTTCGGGCGGTTTTTTATTGCCCCGAATGCCTAAATAACTTACTATTGCCTAAAAAGGAGATGGCATGAAAAGAATTACTTTATTTGGGATAGCTTGTTTTGCTTTGTATGGTTGCGGTAACGATAGTGATGGGCAAAAGGTCACTGAGGAGATGTTACTTGGTGAGTGGAACTGCAAAGTTAGCTCGCAAGAAGCAGAATCAAGGAATGGTAAGTTACAAGATTTTGGTGATCCAGAGTTCGAGGAAAATAAATACATTTTTACCAAAAAAGATGGAAAGCTTTTTGTAAGTTTATCTTTATATAAAGAAGATTTAATGCCTTTTAATCTAGAGGATATTTACAAAAGACCTGAGTATACGGAATATGATAGACAAAGAACTCAAAAGATTAAATACCTATCAAAAGATAGTTTTAGTCTAAACGGTACATATACAATCATCGATAAAAACAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4786-4993 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASQ01000032.1 Gilliamella apis strain A-TSA3 NODE_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4786 28 100.0 32 ............................ AATGGACGATAGAGGAAACGATCAAAATCTTG 4846 28 100.0 32 ............................ TGTCCAGAGCGTGAATGGTAAAATTGGCAACA 4906 28 96.4 32 ....................C....... CTTCAGGTACATACAACCCTGTTTTTGGATAA 4966 28 92.9 0 ...C...A.................... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTTACTGCCGTGTAGGTAGTTTAGAAA # Left flank : CCATCCAATAAATCGCTAACGTTAGTTATAACATCAGCTAGTTCCAATAATAAGAGTTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACATTCGCAATGTGCTGACAACTGCGTGAGGTTAGCATGGCAAACAGGCATGTTTGCCAAGGAGCGTTAAAAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCACAAAACAACAAAACGTCCGAAACTCAAACAACCAAAAAAATTGAGGAACGGGGTTTTTAAAACTTAAATTCCTACTTATTGTTAACCCTTTTTTTAACTTAAAATAAAGTATTTAAAAATCAATATGTTGTAAAATGGCTCAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTGCCAACAACATTTATAGTATATTGGATTCTA # Right flank : ATACACAGCTTATTGAGTAGGTTAAAATGGTGATTTTTTTAAGAGGGGGGATAAAGGATCTATTATTTCTAATAAACAGAAAATAATCGATGCTGTTTTCGGGCTAGCAGTATTCTTCTTTACAAAAGTTAACAATTAAACCATCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAACATATTTATACGAATGGATAAATTTTATGCCATTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACGCAACACGCAACACGCAACCTGCCCAACCTATAATTTCACCTCTCTAAAGTTAAGCTCATACCGTTTATTATTTCACCGCAGTTTATTATTTCGAAAATTTCCGAAATTCCGGCAAAATTTTTCAAAATTTCTTAGTTTAGCCTTTTTATCTCGGCCGATGGTTTTGGTATTAACCGTAGTTGTTTTACAGTCTATCTCTTTTGC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 11858-12009 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASQ01000033.1 Gilliamella apis strain A-TSA3 NODE_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11858 29 100.0 32 ............................. TGGCCGAAATTAAATTATATCTACATGAAAAG 11919 29 100.0 33 ............................. TTCATCAAGTTGTTTTTGAGCGGAAATGGATTT 11981 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 3 29 98.9 33 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : AGGACAAAGTTCACAAGCTAAAAGTATTATATTGAATTTTAATAAATGCTATAGCCGTGAACAATTCAATGCTGAATGGGATAAGGAAATTGAAGTTTCAACCCGTTTATCAAAAGATAATATTGATCTTTATTTAGCATATCAACAAGATGGAATAGTTATTCCTTACTGTAGTAGTAACGAATACGCATGGGAACAAAGCCATGTTACAATTAGTGCATCTAAATGGGCTAGAATTAAAAAAGCCGTCCCACAACTTGACCAACAGCATCTAGAAAAATTGAGACAACAAATACATAGACCAAATGCCATTATTGTGTTAATTGAGACAGAAAAAGAACCTTCTTTTTATTCTAAGGAATTAGGCTTTTATCTAAATTAATTTAAAGTTAAATATTAATAATTTTAACTTGCAATAAGTTGAGTGAATTTCATACAGAAAAATCGGTGAAAAATTACTCCCTTATATTTCAATTATAAAACAATTAGTTATAATTAGA # Right flank : TTACTGGCTAATTCGTTAAAACTACCTGACGAGATTTGGGTGAGGATGGAATACTTTGATCATCTGCAAAAATCAGTAGTTCGCCGTCGCTATATCTAACGTTTTATGATTGATGGTGAGGTTAAGCCAATGTTAGCTGTATTAGAGTATTTAAATGAACATAAAATAAAACCCAACCGCCGACACGTTGGGTAGGCTGCGCGTGGGATTGGAGGTCCTGTCGGAGACTGCCCGCGAATACCTTTTAAATAGTATAGGTAAAAAAATGACTGGCGTAAATATTGAATTCAATGTACAAGATGCACTAGACGCACTAATCAACATAGAATTTGCTTTGCTCGATACACATGTTTTATTTAATCATATAAGTGAAACATTACTTGATATTCATGAAGCACGCTTTAATACACAGGAATCACCTGATGGTATACACCATGGCAAGCATTATCACCATGGTATCAAGAAAGTAAGCCAAAACAAAAAGATAAAGCTTAACGCTC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17276-17068 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASQ01000035.1 Gilliamella apis strain A-TSA3 NODE_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 17275 28 96.4 32 ............T............... TTAATTAAACAAAAAGCGTTAGATCGTATTAT 17215 28 100.0 32 ............................ AGCACGCTAGTAAAAGATGTCGGTGCTGGCGG 17155 28 100.0 32 ............................ CGCATTAGATGAAAATAAACTAAATACAAACA 17095 28 78.6 0 .................CTTT....TT. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.8 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : AGGTATTGAAGCTAAGGATAAGAAAAATAACGTTAGGGCGATAAAAAACGATTTTGTGGTGCGACATTCGCAACGTGCTGACAACTGAGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGACCGAACGAAGGCGGAAGGCAGTCACGTAGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCGCAAAACAACAAAACGTCCGAAACTAAAACAGCCAAAAAAATTTTGAGGAGAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATTATTAAAAATCAATATATTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATGGGATTCTA # Right flank : GTAATTAAAATGGATTTTTAGTATTTAAAACTCGCTGTTCTCAAATTTATCTATGAAATAATTAAAACGCTTATATAAGCGTTTTAACTCTGATTAATATCATTATATCTACTATAAACTATTAGAACATTAATAGTTGTACAATTAAATTGCAGTAATATAGACCTGATTATTCAGTAAGTTTTTAGGATCAAACTGTTGTTTAATTGCACGCATTAATTGGCGATTTGCTTCAGGAATTGCAGCATTATAATAACTTACTTTCGCCGTTCCGATGCCATGTTCTGCTGAAGGCAATCCTCCTAATTCAAGACATTTTTGATAAAGCGCTTGGTGAACGTTTTGCAGATCAGATTGCCATTGTTTGTCATCACGATTATCACGCAAAATGCATAGATGAATGTTACCATCACCAGCGTGACCAAAGGCTAACATACGCATTTGAGTTTGTGCTTCTAGCTGTTTGGTGAAATTGATAAAATCGCTAATGCGATTTATTG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 930-662 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASQ01000050.1 Gilliamella apis strain A-TSA3 NODE_50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 929 28 100.0 32 ............................ TAGAGGCGTGTGAACGAGCAGATATAAGATGG 869 28 100.0 32 ............................ TGCAATCAAAGAGCTAAACGAACTTAAACGAC 809 28 100.0 32 ............................ ATTTTAAAAAAGATTTTTCTACACACATTTTT 749 28 100.0 32 ............................ GTACAAAAAACGGGTATAAGTGATGCGCTAGA 689 28 92.9 0 ....................TA...... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : GAATTAAGAAAAATAACATTAGGACGATAAAAGCGGTTTTGTGGTGCGACATTGGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACGTAGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCGCCGTATAGAAACAACCACAAAACAACAAAACGTCCGAAACTCAAAGAACTAAAAAATAAAGAACTAAAAATTTTGAGGAACGGGGTTTTTAAAGCCTAAAATCCTACTTATTGTTAACCCTTTTTTTTAACTTAAAATAAAGTATTTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TATATAAGTGGCGGTATAGGTAATATCAAGTAGTACACCGCTTATTGAGTAGGTTAAAAATGGTGATTTTTTAAGAGGGTATAAAAGGTCTATTATTTCTAATAAACAGCAAATAACCGATGCTGTTTTCGGGCTAGCAGTATTCATCTTTACAAAAGTTAACAATTAAACCATCAAAAAAAGTTGCATGGTTTTTTCCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTATGCCATTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACACAACACACAACACACAACCTGCCCAACCTATAATTTCATCTTTCTAAAGTTAAGCTCACACCGTTTATTATTTCACTGCAGTTTATTATTTCAGCAATTTCCAAAATTTCAGCAAAATTTTTCAAAATTTCTTGGTTTAGTCTGTTTATCTCGGCCGATGGTTTTGGTATTAAC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 97049-96842 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASQ01000007.1 Gilliamella apis strain A-TSA3 NODE_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 97048 28 100.0 32 ............................ AATTTGGTCAGGCAAAGATGCAAAAGTAACTG 96988 28 100.0 32 ............................ CTTAGTTAAGGGCGAGCCTTTCACATCTTTCT 96928 28 100.0 32 ............................ ATTACGAAACGCGATACCAAAACAGCGCAATA 96868 27 92.9 0 ....................A..-.... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : AGGTATTGAAGCTGAGGATAAGAAAAATAACGTTAGGGCGTTAAAAAACGATTTTGTAGTGCGACATTCGCAACGTGCTGACAACTGAGAGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGACCGAACGAAGGCGGAAGGCAGTCACGTAGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCATATAAAACTAGCTACCAAACAACAAAACGTCCGAAACTCAGCGAACCAAAAAAATTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAACACTTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TATTAATTATTTCTAAAAAGATTAGGAAAAATTTTTCAAAAAGCTAAAAATCCAAATTAGTTATAGCTTTGTTAAATAAAAAACCCCCAGTAATTGGTTGTCCAACTATTGGGGGTCACTTCATTATGAACGGTTTTTTATTATTGGTTAGATAATTTTACAATTATCCTTGGTATTTTTTCATGACAATTGACGCATTAGTACCGCCGAAACCAAAGCTATTAGACATTACTGTGGTTAATTCACGTTCGGTTGGCTCGGTAATAATATTCATGCCTACTGCTTCATCTGCAAGCTCGTCGATATTGATACTTGGTGTAATAAAGCCGTGTTCAAGCATAAGTAGTGAATAAATCAACTCTTGTGCACCGGTGGCACTTAATGAGTGACCAGTCATGGATTTGGTTGAAGAGATAGCCGGGATATTATCTCCAAATACTTGTTTGATTGCCCATAACTCTTTGACATCACCAACTGGAGTTGATGTACCATGAGTATTG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 59978-59830 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASQ01000016.1 Gilliamella apis strain A-TSA3 NODE_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 59977 28 100.0 32 ............................ TTCCCCGCAATTACGAAATGATTTAAATAGTA 59917 28 100.0 32 ............................ ACAAACACTAAACGCCTAGGGAATTGGGTAGC 59857 28 96.4 0 .........C.................. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCTGTATAGGTAGTTTAGAAA # Left flank : TTAGGATGTTAAACAATTATTGCCTTGCCAAGGCAATAGCGCTGACGAAGAGGGCGATAAAAGCGATTTTGTGGCGCGACATTGGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAAGACCGAACGAAGGCGGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCACAAAACAACAAAACGTCCGAAACTCAAAGAACTAAAAAATAAAGAACTAAAAAATTTTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAACACTTTGAAAAATGGCTCAAAAAAAAGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACTGCATTTATAGTATACTGGATTCTA # Right flank : TCGAGTTACAACTCCTCAAATTGCAGAACACGGTTCACTACCGCGCAGGCGGTTTTTTTTATGCCTGTCATTCGACCACTCAGCAGATGAAGTAACCAAACTCTTACAAAGAGCTAAAATTATCATTGATGTACAAAAAAGCAACGATAAGCTACGTAAAAATTGTAGGTAAGGATTATTTTAAAGATGATTATGAGAATGGAAATTTGTTTCAATATTGAGTGACCTTGTTTGTTGATTATGAAGCTAAAAATGATTTTGGTGTTGATTTAAAAAACACTTCAATATGTTATTTTTATTCTATTTTAATAAGAAATGATTATTTTATGTTCCCAGATTTTGATAAAATGGCGATCTCAAATAAAATATATAGTTATATTGATTTAATGACATCAATAGAACATTTTCATTCTTCTTTATTTGATATTGGAAAAATAAGTATTGTCGATAAAATATCGTACCAGATTGATAAAAATAATTTCCTCTATTATGAGAATGAT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCTGTATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //