Array 1 93965-93446 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDUS010000014.1 Escherichia coli strain GDB8P70M GDB8P70M_contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 93964 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 93903 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 93842 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 93781 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 93720 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 93659 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 93596 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 93535 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 93474 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 9 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCACGACTGAAAAAAAACGCGTCACGCGCGCGTGTTCCCCGCGCCAGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCCAGCGGGGATAAACCGTGGCAGATCGATTTTACCGCCAGAATGACAGG # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGGTTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGAGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120992-119865 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDUS010000014.1 Escherichia coli strain GDB8P70M GDB8P70M_contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120991 29 100.0 32 ............................. AAATAGACGACCAGATAGCCGACCAGATTGGA 120930 29 100.0 32 ............................. TCTGTTAATCAGATTAAAGGTGCGGTAATTGA 120869 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 120808 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 120747 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 120686 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 120625 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 120564 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 120503 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 120442 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 120381 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 120320 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 120259 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 120198 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 120137 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 120076 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 120015 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 119954 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 119893 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //