Array 1 465785-464541 **** Predicted by CRISPRDetect 2.4 *** >NC_016051.1 Thermococcus sp. AM4, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 465784 30 100.0 37 .............................. AGTTGGAACATCGCTGTCATTTGTCCTCGCGCAGGTT 465717 30 100.0 37 .............................. AAGAAGTACCGCGACGATCCAAAATACGAAATCAGGC 465650 30 100.0 41 .............................. CACGAAAAAGACCGACGAAGAGGGCAACAAAATCCCGGTGG 465579 30 100.0 41 .............................. TCATGACTGAGCTCAACATTACTGACGTTGCGACGCTCCCA 465508 30 100.0 36 .............................. TCAAAATCATCGAAAAACTCGAACACGGCCGAACCG 465442 30 100.0 37 .............................. GAAGAGGGCCGACAAGGCATGGAACGCGGGGGATCAA 465375 30 100.0 39 .............................. TGAGCGCGGCCAGCACCCTCTCCCTCGCCTTCACCTCCA 465306 30 100.0 36 .............................. AGCGTCCCGATGAGGCCACCATTGTTCGCGAGATCT 465240 30 100.0 39 .............................. GACGGGGACAGTGTCACTTATGAGTACAAGTTCGAGGAC 465171 30 100.0 37 .............................. CGTTTCATTACTGTCCGGATTGTCCCCCGCCAATGCG 465104 30 100.0 37 .............................. AAACATCACGTGGGTGGATGTGCCGGATGAAGAGGGT 465037 30 100.0 37 .............................. AGGCTGACTTTAGGTGGAAGCTGACGTTGAACGTGGA 464970 30 100.0 36 .............................. TATTGGGTCGAGGAATGGGACGCCGAGAATAAGAAG 464904 30 100.0 37 .............................. ATTCCGGTGGAAGTAAATACGCTCCAGCCGGAACCCC 464837 30 100.0 37 .............................. TTGGTTATATAACCTCCACAACCGCTCCTCGATATAT 464770 30 100.0 38 .............................. TTACAGTCAAACAACGGCAAGCGACACCTATGCAATCG 464702 30 96.7 36 ...............T.............. AGAGAAGACTTCAGAGATTTGGAGTTCCAATATAGA 464636 30 96.7 36 ...............T.............. GAAACGCCGAGAATAAGCTTTAAAGCGATATTGGAG 464570 30 96.7 0 ...............T.............. | ========== ====== ====== ====== ============================== ========================================= ================== 19 30 99.5 38 GTTGCAATAAGACTCGAGGAGAATTGAAAG # Left flank : GCATTTTTGTGCTTCCAGGATTTAACGTTTGCGGCGTATCACGTTCAAAGGGCTCCGTTTCTGGAAACGAGCCTCAGAAAGACCAAAAACTTTAAGTGATCCCCTATCGTTCCCCCGGAAATCGGTTTTAAGACCCTTTGATTTGTAACTTTTTGTTACAATCAACGCAAAAAGATGTGACGAAATATTTTCGGAAAATTAAACGGAGGGCAGTACGCTCCCGAGCAAGTTCCCTCCCTGAAGAAATGCGTTCTTTTTGGGTCCAGACTATGGATACGGCCCTTTTAAAGAAACAGGCTCCATTTAACCATCAGGACCAGTTCAAGGATTCCGGCGCTCACCTGATCAGGTTTCGATGAAAGCGTTTCCGGAGTATCAGACGGTCAAAGTGACTTCAATTACAACCCGGAGAGACGTTCTTTTTCACCGGTTTTCAGAAAGGCTTAAATATCGGGGCGTTCTTATTTCTTCGTTGGGCGAAAGGGCGAATTTCGCGCCCT # Right flank : AACCCTCTCAGGCCATCTTTTAGATAAGATCGCGGTCGCAAAACCCCGGCAGATCTCAACTTTCCGCCTACCTATTTGGAATATTTCTCCAGGGACGGGCTTTTATCCAAAATCATGGGGGGAATTTATCCTTATAAAAATTCATTTATATCCTGTGATATTTCCCAAAGTTTCAATGCACGTTAAATTTTCGGTTCAATATAACACAATGGGGCAGAAAAAATTTTTAACAGTAACTTTCGAGAACAGGACGTAATGAACCGGAGGTGAACACTGTGGGGCAGAAAAGGAGAACAACTTGGCAGATTGCAATTCTGATTGGGGTTCTGGTGCTGGTTAGCACGGTTCCGACGGGACACCCGGTCGGGGCTTCAGGCACCTCCATCCAGGGGTACGTGGATGCCCTCAAAAGCGCGTTCCGCGAGCTCACCGGCAGGGATCTCCAGGGCACCGTCGAGGTAACTCCAGGCTCTGGGTTTGAAATCGATCCCAACGCCAAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 2 1219336-1222272 **** Predicted by CRISPRDetect 2.4 *** >NC_016051.1 Thermococcus sp. AM4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 1219336 30 100.0 36 .............................. GAAGGTGAAGACGGATGGACAGGCGAGCGGGGCCGG 1219402 30 100.0 39 .............................. CTGACTGGCTCGACAGCGATGAGCTTTTAACGGTTTACA 1219471 30 100.0 39 .............................. CAGAAAGCCGTCGAAGGAGATGGAGAACTGGAGCGTGCT 1219540 30 100.0 37 .............................. TCAAATCTGGCAAGTTGTCTTCCGTCAATTTGCCCGC 1219607 30 100.0 39 .............................. TGAGTAATTCGATGAGGGCAGGTTGTAGCTTTCGCCTTC 1219676 30 100.0 37 .............................. CAATCGTGAACGTGGGTTCGCTTTCGGCGTATTTTCT 1219743 30 100.0 37 .............................. CTCTCAAAGAAGAGCTTGCGAAGCTGACTTACACGGA 1219810 30 100.0 39 .............................. TTCATTAAAATTTTCGGCGTTGTGGCTTATTACATTTGC 1219879 30 100.0 37 .............................. GTCATCGCAATCGCGGCACTAATCGCGGCGATTGTCG 1219946 30 100.0 42 .............................. ATCAGTGATTACGAGAACTGCAGAGATGATCGCGCTATAAAC 1220018 30 100.0 39 .............................. GGTTGAACGCAACAAACTGGCTCAGGCCGTCGTAGAGGA 1220087 30 100.0 37 .............................. GTGACACGAGGAACACGTCACTGTTTGCATGGAGCTT 1220154 30 100.0 38 .............................. CAGGGCCTCATCCTGATCTTCCTCGCGAGTATTGGGGT 1220222 30 100.0 36 .............................. GCGCTCAATGCCGAGCACTAGGTAAACGTAGTGTAT 1220288 30 100.0 35 .............................. ATGCGGAATTTGTTTACATCAAGGCCGTGCGGAAA 1220353 30 100.0 36 .............................. ATCACGGTATCAAGGCATCGCAGGCGGGCACTTACT 1220419 30 100.0 40 .............................. TGTAGAGTTCAGGGCCAGCCTCGGGCTTCGCGTAAACCAT 1220489 30 100.0 38 .............................. CAACGTGCTTCTTCAAGCCCTTTGCCGCCGCGAGGATT 1220557 30 100.0 37 .............................. AAAACTTTAATTATTATTGGTGCGTACGTTTGTTGGT 1220624 30 100.0 36 .............................. CCCAGAAACGGGCGAAACGGCAGACTAAACGGGCTT 1220690 30 100.0 37 .............................. GAGGGAACTGAGGGAGGGGCGCCTATGAGGCCGGGGG 1220757 30 100.0 38 .............................. TGTTGTGTGCATTGTGGACGGGCACGGGTCAGGAGCGC 1220825 30 100.0 35 .............................. ACATGGTGGAGGAGATATACAACCTTGAGGAACTG 1220890 30 100.0 37 .............................. GAAGAGACCCCTGAAGCTGAAGAGGAGCACGCCCCGT 1220957 30 100.0 38 .............................. TGGGCATCGGCATACTCTGCATGGCAATATCGGACAGC 1221025 30 100.0 37 .............................. TACTGAGTCTGCAATCCCCAACAAGCGAAGGCTTTTT 1221092 30 100.0 36 .............................. GCACGCTACTGATGTTGAAGTGCTCCTCATTCGCAA 1221158 30 100.0 38 .............................. CCTGCAGACGCTGAGGGACGTTTCCGGGCTTGGCCTCT 1221226 30 100.0 37 .............................. TGCCGTACAGAATTGAAGGTATCAGCACGAGAACTGG 1221293 30 100.0 38 .............................. CGCGGAGGTAGAGGAAAAACCCGCCCCTCGGGACGCGC 1221361 30 100.0 39 .............................. CTGTTGAATGTGCCGATAAAGGTGCTCCCGAGGTACACG 1221430 30 100.0 37 .............................. CGACGTAGGTCGTGACGGTCGTATCGACGTAGTGCAG 1221497 30 100.0 42 .............................. GAAATCAAGGTGGCGTCTCAGGTAATAGCTGTATCTCTTTGC 1221569 30 100.0 37 .............................. TGGAAATATTCGCTCTCTATCCCCGCGTGCGCCACCT 1221636 30 100.0 35 .............................. ATACCAAAGAACCGCGACAAGCTCTTCGTTGACAG 1221701 30 100.0 35 .............................. CTGTTTATGATTCCGTAAGAAGCGCCGTCTACGTA 1221766 30 100.0 36 .............................. TTTGCCCCTGAGCCGCCTGAGCCGGAGCCGGTTCCC 1221832 30 100.0 38 .............................. TGAGATAGATTCAGTTCTACACGAGCATTTGTTGGTAC 1221900 30 100.0 36 .............................. ACGGAGACAGCATCACGTACGAGTACAAGTTCGAGG 1221966 30 100.0 37 .............................. CATGGACTGACATTACTGGCCTAAAGGTAAAGACAGA 1222033 30 100.0 44 .............................. GCGAAAGGAGTTGATGTCGTCGAGCTTCCGGTCCATGTTGTCGA 1222107 30 100.0 40 .............................. TCCTCATGGACGGATTCACCGATGCCCCCCGCCTTACGGC 1222177 30 100.0 36 .............................. GGGCTGATTGCTGTACCTTCCAACGACCCCCGCCTG 1222243 30 90.0 0 ............G...........C....C | ========== ====== ====== ====== ============================== ============================================ ================== 44 30 99.8 38 GTTGCAATAAGACTCGAGGAGAATTGAAAG # Left flank : CATCTGGGAGCTCCGGGAGCTCGGCTTTGATGTGTTATCACGCTGAGGCGAGGCCTTCTTTGGGTTCCATGCAAATCCTGCCCTGTTTTTCCATTTGAAGCCCGGAAACGGTCCGGGAGATGGAATTTTAAGTTTCCAAAAATGTGACAGTTTGTTACAATTTATTGAGCCCAATGTAACGAATATTTTTCGAAAATGGAAGCCGAGGGATTCAAGCCCGCGAATCCCGCCAATCCGGATTCAAACTGCATCTTATCCAGTTTAAAGCCGAGATGAGAGTTTGTTTTTGATTACAGCCCCTGTAAAGTCCCTGGAGATGCCACAAAATTTCACACGCCCGGATTTTTGGACGGACCTCGTTCCTCCACAGGGAAATCGGCGTTTTCACCCGGCTTGAATCCCGGGTCTCCCCTGGGTTTTTGCGGAGGCTTTTTCAGAAAGGCTTAAATATCGGGGCGTTCTTATTTCTTCGTTGGGCGAAAGGGCAAATTTCGCGCCCT # Right flank : CGAGAAGATATATGGTTTTCTGCTGTTCCGGTTCAGATGTTGCAATAAACCCTTGAAAAGCCCAAGCCACTACAAAAACTCCCGGAACAGCAGATCCTCAGGCTTTCCGCCGGCTTTTCGGAAGACCGCCACGCTCCAGCCGACGTTTCCCACCCGCTCGGGCCTGTGGGCGTCGCTGGCAAAGGTCAGCTTAACGCCCCGCCGTATGCACTCCCTCACGAACTCTAAATCCGGAACGCGGTAGCGGGAGCTTATCTCAAAGGCCTTTCCCCTCTCCTCGGCGAGTGCGATGAGTTCAAGGAGATCCTCCCACGAAGGATAGCCGATGTAGGGGAAGCTCGCCCCGAAGTGGCCTATTACATCGACGTTCTCGTCTAGGAGAGCAACCCTGACGAGCTCGGCGTACTGTTCCGGCCTGTCAACCCACTCGTGAACGCTCGCTATCACGAAGTCGAGCTTTTTAGCCATCCAGTCCGGCACGTCAACGCCGTTGGGGGTGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 3 1609161-1610814 **** Predicted by CRISPRDetect 2.4 *** >NC_016051.1 Thermococcus sp. AM4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 1609161 30 100.0 35 .............................. TCGATATAGAGGGTCACGGCGCTCATCGGGGTTAG 1609226 30 100.0 37 .............................. TGATTCCATCAATCGCGGTTAAATTCGCGGGCATCCA 1609293 30 100.0 40 .............................. TGACGTTGTAGCTCTGCAGGGGCAGAGTGAAGCTCACCCC 1609363 30 100.0 38 .............................. AGACTTCATGGCGGGCACTCAGAAACCACTTGTGCTTA 1609431 30 100.0 38 .............................. GTGTAACCCCGAGGAAGTCCGCTATCCATTCGGTCAAA 1609499 30 100.0 36 .............................. GACAAAGCATATTCGTTGCAAGCGTTGACCTTAAGG 1609565 30 100.0 37 .............................. AACCGTTTCGCTTCCTTCTTGCATGGTTCCCACATCC 1609632 30 100.0 43 .............................. TTTTCAGCAACAACAAAGCAACTAAATCAGATGAAAGTTGCAA 1609705 30 100.0 36 .............................. TATTCTGTGGGCTCGGTAGGGAGTAGGATTATTTTT 1609771 30 100.0 37 .............................. TTCAAAATAGTGGGCAATTTCTGCGGGGATTTTGTCA 1609838 30 100.0 38 .............................. AAGCTCGGCGAGAGCATCTCAATCTCTCTCAGCGCGCC 1609906 30 100.0 36 .............................. GGAACCACCCTCTGCCAATGATTTTATCGTCTTCGT 1609972 30 100.0 38 .............................. CAGATACCGATATATTTGTATGTCTACGACGCAGATAA 1610040 30 100.0 38 .............................. TTTGATAGCTCCGGCGCGCTTCAAATATCTCTCGACGC 1610108 30 100.0 40 .............................. CCAGATGTGTCCCTCGACGTGGGCATCTGGTAGGCCAAGC 1610178 30 100.0 40 .............................. TGAGACTAATCAGGAAAAGCGGGATCAGATAGGCGAAAAG 1610248 30 100.0 37 .............................. TACGGGACATTAGTTACGACAAAAAGAGTTCAGGGAA 1610315 30 96.7 37 .................A............ GGGGTTTTTAAACGAAGCGGGAACCTCAGCGGAGATA 1610382 30 100.0 38 .............................. CGAAGACGAAGATGGCGCCCTCTATGCCCTTGAGACCC 1610450 30 96.7 38 ...............T.............. GGGTGATATGACTGTCAGCGTTGAAATGTACCCCTCTT 1610518 30 96.7 37 ...............C.............. ACGACTAATCGAAAGCTTTCGATAGTACTCCATTCAC 1610585 30 96.7 36 ...............T.............. TGTCGGGGTCGCTGATCTCTGCGATAATGTAGTTCT 1610651 30 96.7 37 ...............T.............. CGGTAGCTTCTTCCTGGCTCTGATCCCAAGTAACTAC 1610718 30 96.7 37 ...............T.............. TTTTCTCTGTGTATGTAGACCCTCATGTATCCCTCCT 1610785 30 73.3 0 ...............T.A....GAA..CCA | ========== ====== ====== ====== ============================== =========================================== ================== 25 30 98.1 38 GTTGCAATAAGACTCGAGGAGAATTGAAAG # Left flank : GGGAGAACGGAAAGCTCTGAGCCCCTTTCTTCTATTATCATGCTCAAACCACTGTATTTCAGGAAAAATAACCTTTAACGGCTGTTTTTGTTCAGTAAAGTCATTTCAAAGCCCTGGAGATGAATTTCAACTGTTTCGAAAACATAACATCCTGTAACAATGTCAATCACCTAATGTAACGAATTTTCTTCAGAACATAGAGCAGACGACTTCCGCCCCCCTAATCCGGATGAAACCTGTTTAAAATTGTTCGTTTCTGGCTTAGAGCCTGTTTAATGTTCGGCCTTGAAAATTCTCCCCTTTTGAAGCTTTGGAGATCAACTGCATTTCGACCTCGATTTTGTCATCTCGGAACATTAGGACCAGGCTAGCCGATTGGAGGTGTTTCAGAGCTTCAATCCGAGTTCCCTCATGATCGTTTCAAGACCGATTTCTAGAAAGGCTTAAATATCGGGGCGTTCTTATTTCTTCGTTGGGCGAAAGGGCGAATTTCGCGCCCT # Right flank : AAAATGTCGCAAAATATTTAATCCCAGAGTTCAAAGTGCGTACATGAGCCTCGGAAGGAAAATCAAATCGTTCGTCGAGGACTTCAAAGTTGTAATCCTGCTCCTCATGATACCGGTTCTCCTAATCCTGTTCCGGTTGCTCCTCACGGCATCGTACATCCTAACCGGAGGCTACCTCCTCGGGATCATCGCAATCCTGCTCGTACTGCTCGGCATCGGATGGATCCTGAAGCCGGCGGACGTAGAGAGACGCATCTAAATCTCAACCCACGTGAAGTCCCTCGCAACCTCGCCCGGAATTCCGGCTTCCCTGACCTTCTTCTCCAGGACCTCGTGAGGATAGTTGCTGTGGCTTATATGCGCGAAGACGGTGTAGCCTGCCCCGACCCTCTTCGCCAGCTCTATCGCCTCCCTGACCCCGAGGTGCGAGCCGGGAATGGCTTCCCTGTGGGTCATCTCCGCTATCAAAAGGTCGGCTCCCTTCATGAGCTTTATTGCTT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //