Array 1 48857-47985 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGQDG010000011.1 Ideonella paludis strain KCTC 32238 NODE_11_length_54329_cov_32.726172, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48856 28 100.0 32 ............................ AGTGGGTGTGTGCTGGGGCCTCGGGTGCGATG A,AG [48849,48852] 48793 28 100.0 32 ............................ TTTGACTTCCCCCCTCCGCAGATCAAAGCACA 48733 28 100.0 32 ............................ AAACCCGCTCGCTGTATTACTCAAGGATGGAT 48673 28 100.0 32 ............................ TATGAGGTAGTGCTGTTCGCTGGCATGCCGAA 48613 28 100.0 32 ............................ TGCTGCAGCCACTGCTGCCCGGCAACGTCTAC 48553 28 100.0 33 ............................ CTCAAGGTTCGCGCCTGGTGGGGGCCTACTCGT 48492 28 100.0 32 ............................ TCCAGCACCTTTGGCCTGCCCATGAAGAACGA 48432 28 92.9 32 T..........................G TATCAGTGGGGCAAGTTTCCGCCTGTATTGGG 48372 28 100.0 32 ............................ TAGCACTTATGGGAGCGGCAGTCTTTGCGCCT 48312 28 100.0 32 ............................ AAGCTAATCGTCAGGCTTCAGCACCTAGCACT 48252 28 100.0 32 ............................ TTGAACCAGTGCCGGAAGTGGCGGAGGCACTC 48192 28 100.0 32 ............................ ACACTGCGCGCCACACCGTCATCCACCAGCCA 48132 28 100.0 32 ............................ TCGCGCCCATCGACCCCTATGCGCCTGACGCT 48072 28 100.0 32 ............................ CACTTGGCTTGTTGATCCTCTGGATAGGTGAA 48012 28 92.9 0 ......................TC.... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.1 32 CTTCACTGCCGCACAGGCAGCTCAGAAA # Left flank : AAGACGCACCTGGCAGTCGCGCTCGGGCGCGAAGCCATCCTGCGCGGCTACTCAACGCTGTTCGCCTCAGCGACCAGCATCGTGACGCAGCTTGTGCGGGCCCACACTGAAGGGCGTCTCGAGGAGAGGCTGACGCACCTGGCCAAGCCCAAGCTGCTGGTCATCGACGAGCTGGGCTACCTGCCCTTCGAGGCCAACGCGGCGCACCTGTTCTTCCAGCTCGTGAGCCGTCGCTATGAGCGCGGCGCCACGCTGGTGACGAGCAACCGATCTGTCGCTGAGTGGGGCGGCGTCTTCGGCGATGCGGTGGTCGCCACCGCCATCCTGGACCGCCTGCTGCACCACAGCCACGTCGTCACGATCCGCGGCGACAGCTACCGACTCAAGGCCAAACGCAAGTCCGGTCTGGTGCGAGACACCACCACAATTGCCGCGGCAACCTAATCATCAACCCAGGGGGTCAATTCTGAATGTCGTCAGGGGGTCAGTTCTCGATGTCG # Right flank : GGAAGGCTGCAAATCACAATCTGCGATAGGTTCAAGATCGCAAAGTTGTCTTTGAGAATGCCATCCTGACCTCTACTTGCCCCCACGGCATTTGCCGATGGCAGGGCTTACGGAGTTGCCTTAAGTGCCGGTGTCAACCTAAAGGTACTTCTTAAAGTACCCCCCCTGCACCCTCACCAGCCCACCCACGCCAACAGCCACGGGCACCAGCACCCACACAGGCTGCGTCAGCGATGGCACAGCCAAGCAAGCCAAGTAGCTGGTGATCAGCAGCCCCGTGCTTCCCAGCTTGGCGCGGTGGTAGAGGCTGGCGGACTCGCGCCCTGCGTTGGCGCGGCGGCGGGCGCGGGCCATGAGGCCATCGGTCAGGCCGATGGCTGTTGTGAGGGCCAGCAGGGGCAGCATGGCCAGGAACATGGCAGTGCGTGTGGCCAGGGTGTAGTTGGCCACCACCAGGCGCTGCCATGAGTGGCCAGTGTCTTGGAACATCTTTTGCGCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 53977-51128 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGQDG010000011.1 Ideonella paludis strain KCTC 32238 NODE_11_length_54329_cov_32.726172, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 53976 28 89.3 32 GCA......................... AAGATCGGCGTTCAAAGACATGATTTCGTCGT 53916 28 100.0 32 ............................ GTGCGGGCTTGCTCGGGGCTGGTGGGCCAGGG 53856 28 100.0 32 ............................ ATGAGCAAAGACACCACCCCCGTGCAGGTTGC 53796 28 100.0 32 ............................ ACAAGCTATCAGGCAACAACTGATCGGCTAAC 53736 28 100.0 32 ............................ AAAGTTAGGAAGCCGTAAGCGCTTCACGAAGG 53676 28 100.0 32 ............................ GATACGGCCCTTGCGAACAGCTTTCTCGATGA 53616 28 100.0 32 ............................ TCGCGCTCGGCCATGATTTCGCGCTCCATGTC 53556 28 100.0 32 ............................ AAAGGAATAACCGCCATGTCGTGTATCCACCC 53496 28 100.0 33 ............................ CCGCGCGCCATGGATCAGCGTGCAGTCAGTGCC 53435 28 100.0 32 ............................ AATACGTTGCTTCAGCCTTTGTCGGGCGTGTC 53375 28 100.0 32 ............................ AAGTGGTGCTTGATCCGTCAATCCACGTTTGC 53315 28 100.0 32 ............................ CTATGGTGCTGAGTCGCCGCGCTGTGATTGCA 53255 28 100.0 32 ............................ TATTGCGGCATCTGGATGAACGTCAGCGGCAA 53195 28 100.0 32 ............................ GCTGATTTTTTGGACTGTGCGCCGACTCCCCT 53135 28 100.0 32 ............................ ACTCCCGCCCCTGGTACACCTCCTGCCTCGGC 53075 28 100.0 32 ............................ TTTGGAGGACGGCCACGCCGTTTCGGTTGCTC 53015 28 100.0 32 ............................ CTGATGTGATCGGGCCTTTTAGCGAGGCTGGC 52955 28 100.0 32 ............................ GCAACGGCCCATGGTGGGACTACAAGCCTAAA 52895 28 100.0 32 ............................ AGCAGCCGCCAACAGGTCGGGGAACTGCTCCA 52835 28 100.0 32 ............................ AACAAGATCAACAACGCCTGGGAGCGCCTGAA 52775 28 100.0 32 ............................ GCACTGTGGGCACCCGAAACCTGGGGGTTTAT 52715 28 100.0 32 ............................ TGGCTGGTGCAAGACCTCGACACCTTCGCCAA 52655 28 100.0 32 ............................ CCGATGTTGACGATGGCGAAGAAGGGCACCGC 52595 28 100.0 32 ............................ TGTCGCACTGCTCATCAGTCAATTCGTGCTGT 52535 28 100.0 32 ............................ ATGAAAACTCGCCATGCTCCGCAAGGCAAAGC 52475 28 100.0 32 ............................ AAGTCACGGCAAGGCCAGGGCTTGCGAAGCGA 52415 28 100.0 32 ............................ GCCTGGCCACGGATGGCCGCCAAGCTCTTGAT 52355 28 100.0 32 ............................ TCGAGCGCGCCTGGATTGAAGGCGGCCGGATC 52295 28 100.0 32 ............................ CAGACCAAAGATAACTTTTGGCGCCCCAAAGT 52235 28 100.0 32 ............................ ATACGCGCATGGAACGCCCTGGAAAACGGCCA 52175 28 100.0 32 ............................ TCCAAAACCTGGCGGCGCCCATCGCTCAGAAA 52115 28 100.0 32 ............................ TGGAAGATGATTGCGGCGCTCACAGCTTGTCA 52055 28 100.0 32 ............................ AGATCGGCGGCTAAAGTCCGCCGCATCGACAG 51995 28 100.0 32 ............................ ATGGCCAGGAAGCGACAGCGACGGAGATAAGT 51935 28 100.0 32 ............................ TTCACCATGCGTGCCGAGACCACCTCGGGCGC 51875 28 100.0 32 ............................ ACGATGAGGTCAATGCGGCCGGTGGCCTTGGC 51815 28 100.0 32 ............................ CCACAGTGGCCGCAGCAGCAAGCCGCCTAAAC 51755 28 100.0 32 ............................ TGGTTGTTTGCCCATCCTTTGCGCTCACTGGT 51695 28 100.0 32 ............................ CAGCGTAAGGCAGGGAATCAGGCAAAGGATGC 51635 28 100.0 32 ............................ ACACTATCAAGGCAACTTGATGGAGATCATCT 51575 28 100.0 32 ............................ TGCGATGCCCTCGTCAATGATGAATGCGCCAG 51515 28 100.0 32 ............................ AGCTTGCGATAGTTGGGGTCATCAAACGGCCC 51455 28 100.0 32 ............................ TGCCCCACGACGCAGATCATTCAATGCAGGGC 51395 28 100.0 32 ............................ GCCCAAATCTCTTAGCCGCCGCACGCTCAATA 51335 28 100.0 32 ............................ CATGGATGTTGAAGGCTTCACGCGCTGGACTG 51275 28 100.0 32 ............................ ATGAGTCGCACGAGGATGACCCATTCGCCGCC 51215 28 100.0 32 ............................ TTGCTCAGCGGCGCGCCGCCCACCACAGCCAG 51155 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 48 28 99.8 32 CTTCACTGCCGCACAGGCAGCTCAGAAA # Left flank : GGCGGATGCAATTCTGGATCGCGTCGTTCACCAGGCTCACCGCCTTCAGCTCAAGGGCGAGTCGATGCGTAAGGTGCAAGCCAAGGCAAAGATGAAGCTGCCTGACTGATCACATCAATGGAAAGCTATGCACGTTGACCGCGTAGGGGATCACGTCGTCGGACAGGCTGATCACTTCGTTGGACTTCGTGCATCACGTACTGGAATGGCTGACCACTTGCCATTGGACTTGATGCGCACTGAGTGCTGGAATA # Right flank : ACCAAGTGGCGCCGTCGAAGTGGCGGCTTTGGCTTCACTGCTGTCAGGCGACATCCAATACTGCCCCCCTGACGACATCCAGAACTGACCCCCTTCACTAGAAGGAGGTCCGCATGACGGACGTTGTGACCGATCCTTCCGGCGTCATGGACGTTGGAGGAAGACAGACGATGTTGGCGCCACAGGAGGTGCAGAGGATGCTGGCGCTAAAGGCGCAAGGATGGGGAGCGAAGCGCATCAGCAAGGAACTAGGCTGCAGCCGCAACACGGTACGGGAGTACCTGCGCAGCGGAGGCTGGAAGCCGATGGACGTGTCAGGTCGGGCCAGCGCATTGGCGCCGCATCTGACGTGGCTGGAGCAGCGCCTGCGCCAGCACAAGGGCAACGCCGACGTGGTGCGCCAGGAGTTGCAGCGTGAGTTCGGTATCGCCGTGAGCCTGCGCACCGTGCAGCGCGCCGTGGCGCCGATGCGGGTGGGACTGCGGGCTCAGGCAGTCGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19072-21079 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGQDG010000012.1 Ideonella paludis strain KCTC 32238 NODE_12_length_36579_cov_33.745940, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19072 28 100.0 32 ............................ ATTCGCGAGCGCCGACCAGTCCGTGCCGGTGT 19132 28 100.0 32 ............................ TCACGGACGGCGGCGCTATTGACGCCATGAAC 19192 28 100.0 32 ............................ ACACGCCAGCACCAGCCTCAAATGGGGTTCCT 19252 28 100.0 32 ............................ TCGACACTGTGACAAGCGCCACGAAAGCCGAT 19312 28 100.0 32 ............................ TCGAATGCGACCCAGAAAGTCTCGCGCACATC 19372 28 100.0 32 ............................ TCATGACCGACCCCGCCCAGCACAGCCCCGAA 19432 28 100.0 32 ............................ TGGCGGCAACAATCAAGGAGCTTCAGCAATGA 19492 28 100.0 32 ............................ CATCGCCTCGTGTTTGGAGTCGTAGTCGTAGG 19552 28 100.0 32 ............................ TATTGGGACGTGCGACCCATGCTCGACCCCCA 19612 28 100.0 32 ............................ AGCACGTGCACCATTGATTGAGGCCGGACTTG 19672 28 100.0 32 ............................ TCTACAACACTGCGGCCTGGAAGCGTCAACGC 19732 28 100.0 32 ............................ TCGCGCTGCTGCAGGCCGTCTTCAGGCAGCCA 19792 28 100.0 32 ............................ ATCGAGCGTGGTGACCTTGAGCTGATAGGTGC 19852 28 100.0 32 ............................ TGCAGGTGAAAACACCTCACCGGTTTCAGGGT 19912 28 100.0 32 ............................ ATCGTGGGGGTGGCGCGCCGGCTCTCGATCAC 19972 28 100.0 32 ............................ AGGTGGTGGACCCTGGCAGCTTGAACTGGCAA 20032 28 100.0 32 ............................ GCGCACCAGGTCAGCACAGGGTTGCCGTTATG 20092 28 100.0 32 ............................ AGCGCGGTTTGCATCTTGGCGCCCGGGTGTTG 20152 28 100.0 32 ............................ TTCACGGCTGCATCAGAGCCGCAGTCACGCGA 20212 28 100.0 32 ............................ ATTGATCGAGCATTTGCGATCCGGTCTTTTTG 20272 28 100.0 32 ............................ TTCTCGGCTTGGCACTAAGCCTCTGCAATTCA 20332 28 100.0 32 ............................ TGGGGAAGAGGAAACATCATGAAGAAGATCGT 20392 28 100.0 32 ............................ TGTCCGTCGCCTACAAGTACCTGTGCTTCCAA 20452 28 100.0 32 ............................ GTAGCCAAAAGGAAAAGCGCTGGGATGTGGCC 20512 28 100.0 32 ............................ AGGAAGTTAACCAGGAAGTAAAACCTATTACC 20572 28 100.0 32 ............................ AAAGGTGCGCGATGATCAAGAAAAGATTTCTG 20632 28 100.0 32 ............................ TAGCGGATGCGTCACTGGTACCGTGTTTTCGC 20692 28 100.0 32 ............................ TCAAGGGCGCTGCGCGACGGGGGCAACAAGCC 20752 28 100.0 32 ............................ ACTCTGGGCACCCGGAACCTGCTTTACGGAAT 20812 28 100.0 32 ............................ TGATCTCCTTCGCGCACTCGGCGCAAACCATC 20872 28 100.0 32 ............................ ACGCAGGGGCGCTCGTCGTCCTCGGGGTCGCC 20932 28 100.0 32 ............................ TTCTTCTTGCCGCTGCTTGTTGTCCTTGGCGT 20992 28 100.0 32 ............................ AAAAAGAAGGCGGCCAAAAGTCTGGCCGTGAC 21052 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 34 28 100.0 32 CTTCACTGCCGCACAGGCAGCTCAGAAA # Left flank : ACCGCCTACAGCAACTGATGGCCTTGCCGTGGCTAAACGGAATGAGGGATCACATTCAAGTGAGTGCCCCAGTGGCGGTGCCCGCTGACGCGAGCCACTGCCGGCTGAACCGAGTGCAAGCCAAGAGCAGCCCCGAGCGCCTGCGCCGACGACAAATGAAGCGACATGGCTTGACAGCGGAGCAGGCCCGAGAGCGCATTCCCGACAGTGCGGCAGAAATCTTGAAGTTGCCTTTCCTGCCCGTCACGAGTGCTAGCACCGGTCAGAGGTTCATGCTGTTCTTGAGACTAGGCCCACCTAGCCCTAGCCCTGTGAGCGGTAGCTTCAACGCCTATGGTCTGAGCAACACTGCCACAGTGCCCTGGTTCTGACCCTTTTTTGAGGGTGGCGCGCAAGGCCTTGTAAATCAAGGACTTGCGCGTTTTGCTTTTTATTGGGTTCAACGCGGGCTCAGACTGATTTCAGTATTAGGCACAATGGGTTAGCTGGGTTCAAGGCTA # Right flank : ACGCTCAAGAAGAAAGACCAGACAGAGTGGATGCTTCACTGCCTGCGTATTCCATTTGACATGAACACCAAGTCCAGCGATGTGCTCGCTAGACGATACCTTTGTCAGAAGCATCGAATTCGAAGTGAAGAGTTCACCCACGAACACTTGTTGGGTGGAGTGATCTGTGGATAACTGTCATTGCCAATTTGGAAGCATCATTCCTCCTTGGGATCAGCTCAGAAAACCAACATCGTGCGCCCAGCTGGGTTGGTACGGACATCAGGTGACCGCGTTGTCACCGGCTCTGCGGCCCTAGTGGGCACCGCGGATGTGGAGGTGACCGGCCGTCCTGGTGCCTTGCGAGGCGGCATTGTTCAGGTGATTCAGGATGCCGCACGCGTCCATCGCATGTGGTGACTGGCAGCGCGCACGCAGGGCATTCAGGGTCGATTCGAGCGATCGCAGTTCGCGAATGCGCTTGGCCACATGCTCAATGTGCGCATCCAAGATGTTGTTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //