Array 1 1488-1279 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPY010000010.1 Gilliamella sp. B14448G12 NODE_10_length_91703_cov_170.310092, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 1487 26 100.0 35 .......................... CCGTAACCGCCAAATAGGCGGTTTTTTATTGGAGT 1426 26 100.0 35 .......................... CCGCAAAACAAATGCCGTCAAAAATGGCTGAATTT 1365 26 100.0 35 .......................... CCGGGCATTGCGACTATTGAATTTAGTAGCTCTGT 1304 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 4 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : TTCAGTATAAAAATCAATAAATAATTTATTTTAACTCTATGGTGATAAACAAAATACCATGTTGAGCTAACATAAATGTTTATTTTTCATATTGAATAATAGATTACAAATAACAGCGCTTATAAAATTATTTTCATTCAAAAAAATATATTGGATTACTCAAAATCATAGAAATGTACCTACAAAAAACGAGTACTTGAGATTAATTTGTAAAAATTTTATAACCAAACTACATCAGCAAACAACTTAAAAAGTAGAGTTATTTTGATAACAACAAATCATTAAAAACAGATCAATAAAAATTATCATTTATTAACTGCATGAAAAATATAAATTTATTGGTAGAATTCCGTAGAATCTAATTTTAATTCCCATCAATTTTAATTAATTGAATAAAAACATAGTGTTATAAATACTGATTTTGATGAAAAATAGCCAAAAAAATCGGTAGAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : CCGAAATTGCATCGATTAATAACTTTTTTAATGGAAATTACTATCTGTTCTTAGTGATACGTTTTGTTATTTATGCATTTTTTATTTGTCTCCTTATTAAATTTAAAATAACCATAAAAACTAAAGTCAACTCACAACTGTTTTTTAGAACTAGCAAATTGTGTTTTTTCTTAATTTGTTTTAATGAAATAATGTTGTTTATTCGGATGGAGTAAAAAATGTCTGCTATGAGTTTCTTTGACTATGTGATATTGTCACTTGGATGGTCTATCAATAATGGACTATGGAACATTATATCTATGTCTGGCATTTTTATTTTGCCCTAAATATTTAAAATGATTAGCATCATTATTGATGTTAGAGACAAAGGGGCGCTTAAAGGAGAACATACAAATATTATTGTTACTCGATTAGAACAATATATTTATATAAGTATTGTCGTAATCTTTTTTGTGTGTTATCCATCAATTAGTCTTGATATTAGAGTGCTACATTATGAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.20,-10.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 112-384 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPY010000034.1 Gilliamella sp. B14448G12 NODE_35_length_1448_cov_141.588408, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 112 29 100.0 32 ............................. AAAATCTGATTTCGTTCATTCGCTCCCTACCA 173 29 100.0 32 ............................. CATTAACCAGTAAAATGGGGCTATTATCTCGC 234 29 100.0 32 ............................. ATAGCACCGCTGTCGGGCTGTTGGCAAAAAAC 295 29 100.0 32 ............................. AAAAAGAAATAGCTAATAGAGATGAAATAAAT 356 29 93.1 0 .............G............T.. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GAGTTCCCTGTATACACAGGGATAAACCG # Left flank : CAAATAAAAACATAGTGTTATAGATTGTGATTTTAATGAAAAATAACCTAAAAAATCGGTAGAAATTTGACGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGGG # Right flank : GGCGATGCGTCAATATTACATAACATTTTTTCTATTCAAAAAAATCACAATTCTACATTTTATTGTTTTTTATTTTTTAATTATATGAAAAATATAAACTTATCGGTAGAATCTCGTAGAATCTAATTTTAATTTCCATAAATTTTAATTAATCAAATAAAAACATAGTGTTATAGAATGTGATTTTAATGAAAAATAACCTAAAAAATCGGTAGAAATTTGAAGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGAGTGTTCCCTGTATACACAGGGATAAACCGTTTGGCGACCGTGAACCAACTCCCCTTAAAACGTGTTCCCTGTATACACAGGGATAAACCGCATTTAATCACAGCTAATTTGCACGGGCAGAAGTGTTCCCTGTATACACAGGGATAAACCGCGTGTCGTAATTGAGTAAAGAGGAAATAAATAGTGTTCCCTGTATACACAGGGATAAACCGGATAAATCCAGTTCTGATATTCTC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 648-1224 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPY010000034.1 Gilliamella sp. B14448G12 NODE_35_length_1448_cov_141.588408, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 648 26 100.0 35 .......................... CCGTTTGGCGACCGTGAACCAACTCCCCTTAAAAC 709 26 100.0 35 .......................... CCGCATTTAATCACAGCTAATTTGCACGGGCAGAA 770 26 100.0 35 .......................... CCGCGTGTCGTAATTGAGTAAAGAGGAAATAAATA 831 26 100.0 35 .......................... CCGGATAAATCCAGTTCTGATATTCTCAGCTGTTT 892 26 100.0 36 .......................... CCGCCGACTGGTCACAGCGACGGATTTATCCTAGGC 954 26 100.0 35 .......................... CCGTATTTCCTGTCGAGTTGTAGATGAACTTGCTC 1015 26 100.0 35 .......................... CCGTGAACCTCATCCCCAGCCGCCATTTTTGCCAC 1076 26 100.0 36 .......................... CCGCTGAATCTCCTAAGGTTCAATCTAATGGAGGAA 1138 26 92.3 35 .A...........G............ CCGACAAATTGGTTAGTCGTGATGTCGTTACTGAA 1199 26 92.3 0 .A...........G............ | ========== ====== ====== ====== ========================== ==================================== ================== 10 26 98.5 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GATTTCGTTCATTCGCTCCCTACCAGAGTTCCCTGTATACACAGGGATAAACCGCATTAACCAGTAAAATGGGGCTATTATCTCGCGAGTTCCCTGTATACACAGGGATAAACCGATAGCACCGCTGTCGGGCTGTTGGCAAAAAACGAGTTCCCTGTATACACAGGGATAAACCGAAAAAGAAATAGCTAATAGAGATGAAATAAATGAGTTCCCTGTATGCACAGGGATAAATCGGCGATGCGTCAATATTACATAACATTTTTTCTATTCAAAAAAATCACAATTCTACATTTTATTGTTTTTTATTTTTTAATTATATGAAAAATATAAACTTATCGGTAGAATCTCGTAGAATCTAATTTTAATTTCCATAAATTTTAATTAATCAAATAAAAACATAGTGTTATAGAATGTGATTTTAATGAAAAATAACCTAAAAAATCGGTAGAAATTTGAAGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGA # Right flank : TCGGCGATGCGTCAATATTACATAACATTTTTTGTTATTCAAAAAAATCACAATTCTACATTTTATTGTTTTTTATTTTTTAATTACATGAAAAATATAAACTTATCCGTAGAATCTAATATTAATTACCATCAATTTAAATTAATCAAATAAAAACATAGTGTTATAGATTGTGATTTTAATGAAAAATAACCTAAAAAATCGGTAGAAATTTGACGGTCAAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 29651-29259 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPY010000022.1 Gilliamella sp. B14448G12 NODE_22_length_35952_cov_166.148298, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 29650 26 100.0 35 .......................... CCGCTCAAATAGATGAGGCAAAAAAATTCGAAAAT 29589 26 100.0 35 .......................... CCGTGCTGAGAAAAGCAAACACAGTCGTATTTATG 29528 26 100.0 35 .......................... CCGGCGCCCCTCTACAGCATTATCTAGAATTAATG 29467 26 100.0 35 .......................... CCGCTACTGGCAAAAAACACCGCGACATCAGGTGA 29406 26 100.0 35 .......................... CCGCCGAGAAAATGGAGAATTTGAAGCGAGGTAGG 29345 26 100.0 35 .......................... CCGTAATGGAATTGATTCTGTACTAATCCTATCCT 29284 26 76.9 0 C..........T..T........TCT | ========== ====== ====== ====== ========================== =================================== ================== 7 26 96.7 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : AAAAAGACTAATTTCTAGGTTAGATTAGTCTAGAAAAGTATTTCTTATACATATAGATAAAACAGCTTTATTTGTAAATTAACCTAATTAAGGTTATTGGCATATGCATTAATTTATCACTTATCTATAATAATATACGGTTTTTTGTATTCCCTGTATTCACAGGGATAAACCGCGCCATGTTATTCCCCCATCGTCACATGTCTGATGTTCCCTACACACAGGGATAAATCGGGGGATGCGTCAATATTACATAGCATTTTTTTGCTATTCAAATAATCGCAATTCTATATTTCATTGTTTATCATTTATTTAATTGCATGAAAAATATGAATTTATTGGTAGAATTCTGTAGAATCGAATTTTAATTTCCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATACAGATTTTGATAAAAAATAGCCAAAAAAATCGGTAGAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGA # Right flank : TTATTAAGAAAGTTCTGGCCGGTCAATCTTCATATCTCATGCCTACTCAGGGGGATTTTTATTCTGCAAACTTATTTTTGTGATCATATCGATTGTAATGGATAGCATCACTTATTAAGTAGTTGTAAATTTCATCTACAATTTCTATCCCATTTTTTAAGTAATCCGCTTCACGTTTTTTGCCTCGTTCACCAGGAAAAAAGACTTCACTATTACCTTTGGCGGGTTTAACGTGTTTTAGTTGATCTAGCATGGCTGACATGTTCTTTTTGAACGTTTCAAGACCGATAAAATAATCGGGATTGATAACAATATGCAAATGTCCAAGATCGCGTCCTTTAGACAAGTCGGCATACATGGATGAGACGTTTTTGCCAAATGGTACACCTAATAAAATGCCTGACAACACATCCACCATCATCATTAGCCCATAACCCTTGGCATCCGCTATTGGTAATAGAGCGTTGACTTTGTGTGGATCGGTTGTTGGTTCACCTTGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31504-31294 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPY010000022.1 Gilliamella sp. B14448G12 NODE_22_length_35952_cov_166.148298, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 31503 26 100.0 35 .......................... CCGTTACTAATTTCGTCCGCCATACCGATTTTAAT 31442 26 100.0 36 .......................... CCGGACGATAGCAGCGATAATCTCGCCCGTGCAGCA 31380 26 100.0 35 .......................... CCGGTTTCGAGCGGAGCGGACAGGGTGCGAGTAAT 31319 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ==================================== ================== 4 26 100.0 36 GTGTTCCCTGTATACACAGGGATAAA # Left flank : TTTCAGTATAAAAATCAATAAATAATTTATTTTAACTCTATGGTTATAAACAAAATACCATGTTGAGCTGAAATAAACGTTTATTTCTAATATTAAGTAATAGATCACAAAAAACAACGCTTATAAAATTATTTTCATTAAAAAAATATATTGGATTACGCAAAATTACAGAAACGCACTTACAAAAAACGAGTACTTGAGATTAATTTGTGAAAATTTTATAACCAAGCTAAATCAGCAAACAACTTAAAAAGTAGAGTTATTTTGATAACAGTAAAGTATTAAAAACATCTCAATAAAAATTACTGTTTTTTAACTACATGAAAAATATAAATTTATTGGTAGAATTCCGTAGAATCAAATTTTAATTTCCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATAAAGATTTTGATAAAAAATAGCCAAAAAAATCGGTAGAAATTTAGCAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGA # Right flank : TCATATTAAATTAGAAGTTATTATCTTTATAAGAATGGATTTTAGATATTATTTATACGATATAGTGTTGATTGATAATAGTTTGTTTAAAGTATTATGTGATAAAATTATAATATAAATGAATTTTCAATTATCAGTATGGAGAAGCAACTAAACTCATAAATACCTAGTTATTTTACTGATTATGCTCAATAGTGCTTACAAAAATTGTTTAGTACATGAATATCATCCTAACTTTCAATAAATTAATTTAGGAAAATCTTTTTTTAAAAGTGGATAATAATTAATTCACCTAACTGTTTCGGCGTTTTTTTATTGCTCAACTCATATGAATAAAATACTATTATCAAAAATAAGATCTAATGTGTAAAAGAATTTAATTATTTTATCATCTGTTATTATTCAATAATAAATGGAAGTAAAGAATGAAAAATTTAATTGCTATTTCAATATTAACTTTGATCGGTTTCAACTCTTTTGCTAATGAGAATGCAAAAAAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 34737-34343 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPY010000022.1 Gilliamella sp. B14448G12 NODE_22_length_35952_cov_166.148298, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 34736 26 100.0 35 .......................... CCGCCTTTTTGAATTCGGGGGAAATTGCATTTGGT 34675 26 100.0 35 .......................... CCGATGTCGACAAAAAATTAGAGGATGCGCAGGAC 34614 26 100.0 35 .......................... ACGCCGTTATCTCGTGAGGGGCAACTGTCAAAGTT 34553 26 100.0 36 .......................... CCAGGCGAATGGTGCTGTAGCGACGGCTATTCATGA 34491 26 100.0 35 .......................... CCGCTGGATCAGTGGGCTGACGTTCGAAATGTTCA 34430 26 100.0 36 .......................... CCGTATTTTTACATCAGGTGTGCAGGGAATGAAAAA 34368 26 96.2 0 .............G............ | ========== ====== ====== ====== ========================== ==================================== ================== 7 26 99.5 36 GTGTTCCCTGTATACACAGGGATAAA # Left flank : ATCCAAAATAAAACAAGAAAATTATTTTAATAAATAATTTTCTTGTTTTTATCTTTTACCCATAAGGGAATATTATCCTTTTTTATTCAACTTTTAATTAGGAGAATGTCCAAGTTAACCAACGAATACATACTTCTTTCAACAGAATATTTCCTTGCTTTAATCAATTGTGAAGCAACTATACCTGATGATGTATCATTAAGTTCAAATGTTCCCTGTACACACAGGGATAAATCTTTGATGCGTCAATATTACATAGCATTTTTGCTATTCAAATAATTGCAATTCTATATTTCATTGTTTAAACTTTTTTTAATTACATGAAAAATATAAATTTATCAGTAGAATTCCGTAGAATCGAATTTCAATTTCCATCAATTTTAATTAATCAAATAAAAACATAGTGTTATAAATAATGATTTTGATAAAAAATAGCCTAAAAAATCGGTAGAAATTTGTTAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGA # Right flank : CCGCAACCATATCAACAACGAGTTATTGCCGAGCGCGACGAATTGTCGGGCAAATTAGCGAAATTAACTGAATTTATCAATTCAGATCGTTTTACGGAAATAGTACCGGATGAGCGCGAACGCGATAGATTGATTTTGCAAAAATCTATAATGACGGCATATTTGGACGTTTTAAATTACCGTATCGATGCATTTAAATAATTATTCGCATCTAATGCATAAACTATCAAAATTTCTCAGAGTTTTAAATTTAAAACTACATAATTAATCAAAAAGCGAATACGCTAAAGAAATATTACAAAATATCTGGTGCAACACCTAATTAAACGAGGAATGTCAGTGAAATCAATGACATATTGTCAAAAATTAGTAAATATAAGGCTGTCACGGCATTAACGAGTCAGGCGCCAACAAATAGCTAAATATTGGTTTACACTATTTAACACAAAAAATCAGACTAACACAACTATATTGTATAAACTACATACATATTCACAGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 66494-66645 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPY010000003.1 Gilliamella sp. B14448G12 NODE_3_length_295676_cov_179.724261, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 66494 29 100.0 32 ............................. CAGCCTGAGATATGTTTTTTATCCTCATAGCT 66555 29 100.0 33 ............................. TGTTACAGTTTCAGTACCATTTGCTTTATCTGC 66617 29 79.3 0 .......................TTTTGT | ========== ====== ====== ====== ============================= ================================= ================== 3 29 93.1 33 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : ATGCGCTAACATCAACTTTATAGCATTAATTATGCCAATAATAAAAATACTCGTTAAATCAAAACAATTTGCTCAAAAAACAAACCAAAAAGTTGGTAAAAATTTTAATGTACTTACTTTTAATTATAAAACAAAAAGTTATAATTAGAGTGTTCCCTGTATATACAGGGATAAACCGCACCACGTAATATGTTCACCGTTTTGACAAACATGTTCCCTGTATGCACAGGGATAAATCGGCGGGCGTTAATATTACATAGCATTTTTTGCTATTCAAAAATCGCAATTCTATATTTTATTGTTAACCATTTTTTAACTGCATGAAAAATATAAATTTATCGGCAGAATCCCGTAGAATCTAATTTTAATTTCCATTAGTTTTAATTAATCAAATAAAAACATAGTGTTATATATTATGATTTTGATAAAAAATAGCCAAAAAAATCGGTAGAAATTTGTTGGTCAAGATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TATTATGCAAGATTTTGCTAATTTTTGTTAAAAAGTTTCAGGTTATGCCTACGTTTCAGTATAAAAATATAAAAAATTAATCTAGTTAACTGATCAATTATTTGATGGATAGCAATACGTTATCAAGAGACATAATAACTAATGTATTAAAACCATACTTCAGCAAAGTGAACAGTTAAAGTAACGTTTTGTTAGTTCTTGATGTTCATTGGTTATCTTCGTACAATAAAAAAAATTTTTATTTTGGTTTGTTATGCAATTACATTTAGTGGTTAATACGTTTGGATCCGATTTGCAGCGTCGTTATGGAGAAAAGATCTATAAATTAACGTTACATGGTGGATTTAGTTGTCCAAATCGTGATGGTACTCTTGGTGTTGGCGGTTGCACTTTTTGTAATGTTGCGTCAATTATCGATGAATCTATCCAAGTCAAATCTATTTCTGACCAGCTTGCAACCCAAGCGCATCAAATGAAAAAATCAAAGCGTTATCTTGCCT # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 274533-274260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPY010000003.1 Gilliamella sp. B14448G12 NODE_3_length_295676_cov_179.724261, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 274532 29 100.0 32 ............................. CCCCCGCAGTGAATCACCCCCCGAAGAAGTAC 274471 29 100.0 32 ............................. TCTGACGCAGTAGTATCTGATATTGATAATGC 274410 29 100.0 32 ............................. CAGGAAAGATGTAAAAAAAAACCTTAGTGAAA 274349 29 100.0 32 ............................. GCCCTGACAGCTCTTCTGCCTTGAACATCACC 274288 29 82.8 0 .............A..........TGTA. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTGTTCCCTGTATGCACAGGGATAAACCG # Left flank : GCTTATTGAAGAAGTTTTGTCTGCTGGTGGTATAAAACCGCCTCTACCACCTGATTATGTCCTGCCACCAGCTATCCCAGAACCTCAATCTTTAGCCGATAGTGGCTTTAGGAGCCGCTAATATGAGTATGTGTGTTGTGGTAACTGAAAATGTTCCACCTCGATTACGTGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGAGTTTATATCGGTGACATATCAAAACCAATAAGAGAAATGATATGGCAACAAATTGTTAAACTTGCAGAAGAAGGCAATGTAGTCCTTGCTTGGGCGACTAATACAGAATCAGGATTTGACTTCCAAACTTATGGTGCTAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGATTAGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAACGTTCTTTAAAAAATTAAAAAAATTGGTAGATTTTTGGGGTACCAATAAATCTAAATAAAACAATTATATATATTTAGA # Right flank : TTAGATTAATTAGGTAAAATAATGAAAAGCCTTTAGCTACAAGGCTATAAGCATATACTCTCCTTAAAGTCTTAATAACGTTTTAACTTTATTTCTTTACCAATATAGGCATATATTCACTTTTATATTTTTATGAATATAAAAAATCGAATGAGATTTATTAAAAATCTTAAATAGTTATGAAGTTCATTTTAAAACATGAATATTGAAAGTAACTGTTAACTAAACTAATAATCAAAAATAGCGTACAATAGAGCGTTATTAAACATATGATCATCATAAATAGTTTAGGAATTTAGCATGACAGGCAAATTTATTGTCATTGAAGGTCTTGAAGGTGCGGGTAAAACGACAGCAGTTAATACCGTTGCTCGTATTTTGAATCAATATAACATTTGCGATTTACAATTTACTCGTGAACCAGGTGGTACACCAATTGCTGAAGCATTACGCAATCTTATTAAAAATGGTTTGGATGATGAACCTTTGACGGATAAAGC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 87233-87024 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPY010000006.1 Gilliamella sp. B14448G12 NODE_6_length_151643_cov_162.492597, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 87232 26 100.0 35 .......................... CCGATTAATGCGCGACAGTGCTTTCGCTCACCCTA 87171 26 100.0 35 .......................... CCGTGGCTAAAATTGTTAGCCAATGTTACCGCTTT 87110 26 100.0 35 .......................... CCGGGGCGTCTGTATTTGACCGAGCATTCATTTCT 87049 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 4 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : ACATTTAAATTAAACTTAAGGTGAATTTAATTTCACCAGAAGAGTAAATTATGATAATCATGACCATACAATTACTAAAAAAGTTGATATTTGTATTGGTTGCCGAGAAAGTCAGGTATTTCCTCTATATAGGGGTAAAATGTGTCAAAAAGTTTCAGGTTAACCATACGTTTCAGTATAAATATCAATAAACAATTTAGCTTAACCTTATGTTCCCTGTACACACAAGGATAAATCGGCGGGCATCAATATTACATAGCATTTTTTGCTATTCAAAAATCGCAATTATATATTTCATTGTTTACCATTTTTTTAATTATATGAAAAATATAAATTTATCGGTAGAATCCCGTAGAATGTAATTTTAATTTCTATTAATTTTAATTAATTAAATAAAAACATAGTGTTATAAAATGTGATTTTAATGAAAAATATCCCAAAAAATCGGTAGAAATTTGACAGTCAATATTTTAATTATAAAACAGTATGTTATAATTAGA # Right flank : CCAATATATTCTATAGATAAAACTCGTTATTATTAATAAGAACAATATTGTTAATTTAGGGATAATTTTTCAGGTAAGCGTTTGAGAATGATAACTTAAAAAAATTATAAAAAATCTTTTAAAAAAGGGATTTAATTATCATAAACCAAATGATATGGTTGATTTCTTGAATTTTCGGACTTTTCCCAAATCTTATTGGTCTCACGATAATTTTTTGTGTATCAAACAATTTATTTTGTTAGAAATGGTACTCAAATATGATTTATTGCCAATTTCGAAATTAACCAAGAAAAAAATTATAATGATAAAACATTTATAAGTTACATCAAATTATTTGCTAAATCTAAAACGTCGAAATTGAGATAATGATTTTTAGTTGAATTAGTTAATGAAGTAAACAATTTAATTAGTTCTGTTAACCAAATAATTACTGCAATAATAATTCATGATGATAATAAATTACTTTTAGCAGAGAAAATAAGAGATTTGCTTAATAAAAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 95507-95237 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPY010000006.1 Gilliamella sp. B14448G12 NODE_6_length_151643_cov_162.492597, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 95506 26 100.0 35 .......................... CCGATCACCCCCTATTTTTGACCAACAACGTCGAT 95445 26 100.0 35 .......................... CCGTTGAATTACGGAAATACGGCGAGATAAAAATT 95384 26 100.0 35 .......................... CCGACAGCGCAGGAATAACACGCGGTCTAGCAAGC 95323 26 100.0 35 .......................... CCTGATAACGGATTGACAATTTCGGCTGGGTGGGT 95262 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 5 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : CAAAAACTAAAGATTTTGAGTTCTCTCTAGCTGGCTTTGCAAAAGCATTTAAAAAATTGCAAAAAAATTGTTCTACTAACTAATCAATGTTCCCTGTTCGCGCAGGGATAAACTGAATTTGACGTAATACGTAGTGGTTTATCTCCTATGTTTCCTATACACAGGGATAAACCGCGCAAGTTTCAATGGGCATTCCGCCCACTACGATGTTCCCTGTGCACACAGGGATAAATCAGCAGGGCGTCAATATTACATAGCATTTTTTGCTATTCAAAAAAATCACAATTCTACATTTTATTGTTTTCTATTTTTTTAATTGTATGAAAAATATAAATTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTACATTAATTTTAATTAATCAAATAAAAACATAGTGTTATAGAATGTGATTTTAATGAAAAATATCCAAAAAAATCGGTAGAAATTTGACGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGA # Right flank : CCGTAATGAAAATTTAACGACATTCAAATAATGGAAAATGAAGCGTTAAGAATTAGGCATAAATCAAAGTGATCAATTAATTATATTGTGTATAATTTAATTACTTTATTTATTTCAGTTGTAACTATTTGGAACTTCAGTGTTAAAAGATGAAAAGAGATTGGGAATTAATTAGAAAAATAATGCTAGCTATAGAAGACTCTCCATGTGATATGAAAATATCGTCATTTTCGATTAAAGGCTATGATCCTGAGATTGTTGGTTATCATATAAAACTACTTAATGATGCACGTTTAGTTGAAGCCATTAATTCAAGTAGTGATCGAATGATGTATGAATATTATGCTCAAGACTTAACGTTAGCAGGACATGAATTTTTAGATAATATTAGAAGTGATACAAATTGGAACAAAATAAAGAATCTTATTAAAGGTAAAGGTGGTGAGTTAACCTTTGAAACCATAAAAGCGGCAGCTTCTTATATGATTGTAAATTTGTTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 97625-97290 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPY010000006.1 Gilliamella sp. B14448G12 NODE_6_length_151643_cov_162.492597, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97624 29 100.0 33 ............................. TGCATTAGGATCTCGCTCAGTTGCTTTTTGAAC 97562 29 100.0 32 ............................. CAGCCGTAAAAATCCACAACTGGGTAAAATCA 97501 29 100.0 32 ............................. TGACGCGGAGATTAATTTTTGCACTTGCCAAA 97440 29 100.0 32 ............................. TTCGAGTCGATCGCCTTTCCAAAATTTATTCA 97379 29 100.0 32 ............................. TTTGCAGCGGTAAAAACTACCTGATCGAATCA 97318 29 82.8 0 .A...........G............ATA | ========== ====== ====== ====== ============================= ================================= ================== 6 29 97.1 32 GCGTTCCCTGTATACACAGGGATAAACCG # Left flank : ATTTATGGTGGGGTTTATAACTTATTTGACAAAGATGTTTCAAACGCTGACTTTGGTAAAACTTTAGAAGGTCGACGTTACTTTGTGGGTACCGAGATTAACTTCTAAATAAATTGAACTAATAAATATTTTTCTGTGAAAAAAGATGGCTGTTTTAACAGCCATCTTTTATTTATAGTAATCTAACTATTTACACCCTAAATATAAAAGTCACTTGTTGAACCTGCCATAACGTAACCTAGTGCAATATCACATAGCATTTTTTTGCTATTTCAAAAATCACAATTCTATATTTCATTGCTTACAATTTTTTTAATCATATGAAAAATATAAACTTATCGGTAGAATCCCGTAGAATCTAATTTTAATTTCCATCAATTTTAATTAATCAAATAAAAACATAGTGTTATAGATTGTGATTTTAATGAAAAATAACCTAAAAAATCGGTAGAAATTTGACGGTCAATATTTTAAATATAAAACAGTATGTTATAATTGGG # Right flank : CAAAACTACTACAAACCGCTCGCATGGAGGTTTCTCATTGCCAAAGTCTATTAAATAACATACCATTGCAAAAAAACATAAAGAATAAGGAAATGGTATGGAAAAGATTATTTATTGTTTGTTGTTATTCCCATTTTTTGTATTTGCTGATGATTTCTATAATTGTAAATATGCAATGGGTATTGAAACAGAAGAAAATCTAAACTATTTGGCGAATGGAACTGTTCGGGTAACCAATGATAGATTTGTTGCTCAAGATTTAACACACAAGGAGCATAAATCGCCTAAATTTACAGAGTTTACAGAATTTGCAGATAATTTATCTATTGCAGAGGACTCAGAGAAAGTATATGTTCTTGCAAATGATAGAACAAAGTATGTGATTACGACTAAAATAAGTAATCTTGTTTTTAAATGGGGTAATTGTACTCTTGATTTATCTATTGACTTCGAGAATGAAAAATTTGGTAACAAACCAGTAAATTTTTTTCCTAAGATAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //