Array 1 81096-83019 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWIO01000014.1 Frankia coriariae strain BMG5.1 scaffold10.14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 81096 30 100.0 34 .............................. CTCGCCAAAATGCCATCGGACGCCAGCACACCTG 81160 30 100.0 36 .............................. AAATCAAGCAGTTCCATGAGGGGAGCTCCTTCAGTT 81226 30 100.0 34 .............................. TGTCACGTAGGGGACTGTACCGGAGTACTGCGGA 81290 30 100.0 39 .............................. TGGCGCCTACCGGCATCGCATCCGGCGAGGGTTTCGGCT 81359 30 100.0 36 .............................. GAGGAAGCGCCACGTGCCGGCGGACCAACTGTTTTG 81425 30 70.0 25 ....................AA.CGAGGTT GGCGATGGCCGTGATGACGGGCGTG Deletion [81480] 81480 30 100.0 36 .............................. GCCATGTTGTGCCCCTTCGTGGCTGCTTGGATGATG 81546 30 100.0 35 .............................. GCGCATATCCGACCGACATTTTCAGCGGATTCAAG 81611 30 100.0 38 .............................. TCGATCAGCATCAGGTGCGCACCCCGGCCGGTCAGCGG 81679 30 100.0 38 .............................. CGGACCGGCTGATGGTGAGACGGGAGGTCGCGGCGGAG 81747 30 100.0 35 .............................. GCGGACTTCTCAGCGTTGATGAAGTTCGGGTCCTT 81812 30 80.0 27 ....................ATGG..CT.. GCCTCCAGCGCGGCGATCAGGTCGCGC Deletion [81869] 81869 30 100.0 36 .............................. ACGGCACGGTCCGGTGTGACCGCGACATACGAGTGG 81935 30 100.0 35 .............................. CAGTATGCGGTCGAAGTGGCACGTGAGGGGGGAGA 82000 30 100.0 38 .............................. TCCGCAAACAAAACGCGGTTACCGTGACGATAGGAAGA 82068 30 100.0 38 .............................. CGTACGACACGACCCCGGCCGAGATGGTGGAGCTGCTG 82136 30 100.0 34 .............................. CTATCCCGCTTAAGGATAGTGACGATGGTTCCGC 82200 30 100.0 36 .............................. GCCATGTTGTGCCCCTTCGTGGCTGCTTGGATGATG 82266 30 100.0 36 .............................. TATGTCGCGATCAAGCCGGGCCAGACCGTAGAGGAA 82332 30 100.0 37 .............................. TTCTGCGCGCTCTCCCCCGCGACGATGACCCCGTTGT 82399 30 100.0 37 .............................. ACGCTGATGTAGGAGACGTTTCCGACTCCTTGTGCCC 82466 30 100.0 34 .............................. GCTGTCTACGGTCACGATGACGCAGTTCATTCCC 82530 30 100.0 37 .............................. CCGTCAAACCCGTCCCCGACCCACTGGCCGTCGAAGA 82597 30 100.0 36 .............................. CCCTTCGGGGCCAGGCGGCCCAGCGGGTTGCGCCGG 82663 30 100.0 36 .............................. CTGGCAACGACGCGGCCAAGGCCGCCGCGGATGCTC 82729 30 100.0 37 .............................. GCGAGCTGCTGACCGCGGCAAAAATGGACGAGATCGG 82796 30 100.0 36 .............................. ACGGCACGGTCCGGTGTGACCGCGACATACGAGTGG 82862 30 100.0 35 .............................. CAGTATGCGGTCGAAGTGGCACGTGAGGGGGGAGA 82927 30 100.0 35 .............................. GCGGCGAGCTGGGCCCGCGCGGCAGCAAAGTCGAT 82992 28 93.3 0 .................--........... | ========== ====== ====== ====== ============================== ======================================= ================== 30 30 98.1 35 GTCCTCATCGCCCCTACGAGGGATTGAAAC # Left flank : CAAGCACCGCGCGCTCGGACGATCGGTCGCATACGATGAACTGCTCTACCTCGAAGCGCTGAAACTAACCCGCACCTGTCTCGAGGGCGAGCGCTACCAACCGTTTCGGATCTGGTGGTGACCCATGTACGTGATCGTTGTTTACGACACCGCCGCGGAACGCAACAGTACGGTCCTCGCGACCTGCCGCCAGTACCTCCACCATGTGCAGCGGAGCGTGTTCGAAGGAAACCTCAGCCCCGCGCAGCTCCTCCGCTTCCGGCGCCGGATCGAAGCTGTGATCGACCACTCCCACGATCATGTCCTCGTCTACACTCTCCCTCCTGGTGCAGACATCGTCCGGGAGAGCATAGGCGCCGGCTGGGCTGCCCCCAGCGACATAATTTGATCATGGACGGTGCAGCGGACCCCCGCTTGGTGATGTTCGACCGGCGGCTCGCTGCGATCCGCCCCTTCCCCCAGCCCTCGACACGCCGTCCGACCTGGGCGTTTATAATCGG # Right flank : CTCAGGACCGGATCGTCCTGGAGCGTGCTGCGCAGGACCAGGTCTGAACCGCCCCGGGTTCCATAGAGGACCGGATGCTTACGCTTCGGCGACTATATCAGCTTCGTTCTGGAGATAGAAGAGGGATTCAAACTCGGCCGGTGGCATGTTTCCACAGCCGCTGTGGATCCGCCGGTTGTTGTACCAGTCGACCCACTCGAACGTCGCGAGTTCGAGATCGTCCGCGGTACGCCACGGCCCCTTGCGATGGACAAGCTCTGTCTTGTACAGTCCGTTCACGGACTCGGCGAGCGCGTTATCGTACGAGTCGCCGACGCTCCCGACGGACGGTATCGCTCCGGCCTCGACAAGCCGGTCGGTATAGCGGATAGACGTGTACTGCGAACAATGCCGCTAAGATAAGATCCGCCCGGTGATCATTATCGTTGGAGCGAAACGCACGCCTCCGTCGGATGACTTCTTGGTCGGGAAGTTGTGTCGGTTTCCTTTCTTGCTGACGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : NA // Array 1 169-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWIO01000110.1 Frankia coriariae strain BMG5.1 scaffold112.110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 168 29 96.6 40 .......A..................... TTGCCTTTCTGGCTCGACTTTTTACGTCGGGAACGTCGCA 99 29 100.0 40 ............................. CGGCTGACGACCTGGCCGACGGGCGCGTCGACGGTCGCGC 30 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 3 29 98.9 40 CGCCCCAGCTTTCCGCACCGGATTGAAAC # Left flank : CTTTCCGCACCGGATTGAAACAACATGAAGGCGTCCTCCGCACCTGTCGCATCAGCGGTCGCA # Right flank : CC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCCCCAGCTTTCCGCACCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.00,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 1 80207-79507 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWIO01000001.1 Frankia coriariae strain BMG5.1 scaffold3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 80206 37 97.3 37 ............G........................ CGCTTTCTACGACGAGCATGAGCACGAATATCGCGAC 80132 37 100.0 38 ..................................... GCTTGTGCCGCCAGGACCGACAGGACTGTGAACACCAG 80057 37 100.0 33 ..................................... GCGAGGCACCGCCGGTCAAACATCTCTGAAGGG 79987 37 100.0 37 ..................................... TGACTACGGGCACGCGGTCCGCCGTGTACGCCGGCCT 79913 37 100.0 37 ..................................... GGTTGCTCCACTCCGCGACGGAGTTGGTGCGGTCCAC 79839 37 100.0 35 ..................................... CGTCGTTGAAGACCGTCTCCAGGAACACTGTCGCC 79767 37 100.0 37 ..................................... TGACTACGGGCACGCGGTCCGCCGTGTACGCCGGCCT 79693 37 100.0 37 ..................................... GGTTGCTCCACTCCGCGACGGAGTTGGTGCGGTCCAC 79619 37 100.0 39 ..................................... CCGCTTCGATCGGATGCGACGGTATGGGCCGAAGGCGTC 79543 37 86.5 0 ..........................A.T.GG....T | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 98.4 37 CTCGCTAACCCCAGCCCGATCATGAGGGCATAGAAAC # Left flank : TCGCCGGCGGCGAGTACCGTTCCGAGTTCGTCGAGGTTACGGGCGGCGTTGGCCTCGAACGCATCGACCTCGCTGTCGGGCTGTCCGTCGGCGAGAGCGGCGTCGCGGACCTCTGCCCAGGCGTCCAGCAGAGCCTGCGAAGTGAACGCCCGCGCGTACAGCACACCCATCCGTTGCTCTCCCCCCGTCTGCCGACGGTGCGTACGGTAGCCGGCGAGCTCGGAGGTGGTTCGTGCCGGATGCGTCGCGCTCGTGGAGGCTTCTGCCTCCGTATCTGGATGCCTGCATGGCGGAACCGATCGGCTTGATCGTGACCGGTACAGATCGTTTCGCCGGGCCCCATTTTTGCCATGATCCTCGACGGCTTCGTTTGTGCAGTTCAGAGCACATGTCGATCTATGGAGACGACTGTTTGTCGATCTTCACAAAGATCGTTTATGATAGGTCCTCGCAACCGGGTACCATCGTCCCAGCTCAGCGGGGGTCCCAGAGGGGGTGCC # Right flank : AGTGCTGATTGATGAGGCTTTGTGGTGAGTGGGTTGGCAAGTGTGATTGTTGTGATGTTGGGCGTGAGGTGGAATTTGTTGTCGTTTGACGGGCGGGGTGTTCTGGGGGCTCTGTGAGTGAGGGGATACCCCGGGTGCTGGTTGTCTGGGGGTGGGTGCTACCGTTGCGGGCACCCTGAGGGTAAATGTCGGGGTTTGGGTAAGCGGATGCCAGCGGGACGGGGGGTCCATGGCGGACGGGTACGTCATGTTGACGTTGGGCGGTGTCCAGGAGTTCATCGCGGCTTCCCGGCGGACGGCCGACCTGTGGACGGCGAGCAGGCTGGTGTCGCGGCTGTGCCAGGTTGCGGTGGACGCGGTGGTGGAGGGCAACGGTGAGCCGGTGCTCCCGGTCGCCGCCGACGTCCCGGACGGGCTGCCGAACCGGATTTTCGCCGTGGTTCCCGCCGGAGATCCGGGCAGTTCCGGGCCGGGCTCCGGCGCTGTCCCCAGCCCTGGGA # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCTAACCCCAGCCCGATCATGAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 6562-5697 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWIO01000025.1 Frankia coriariae strain BMG5.1 scaffold24.25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 6561 36 100.0 31 .................................... CGGATACCACGTCTCTTACATAGAATTTCAA 6494 36 100.0 35 .................................... TCCCGCTGCTCGCGGGCGGCGACAAGTTCCATGGT 6423 36 100.0 31 .................................... GCTATGACGACCTCCTTTCAGCCGGAAAAAC 6356 36 100.0 32 .................................... CGTCGGCCACGTGCCCGTGTTGCCGTAGTACG 6288 36 100.0 31 .................................... CGGATACCACGTCTCTTACATAGAATTTCAA 6221 36 100.0 33 .................................... TCAGCGGTTGTGCCGGGTGGCAGCAGATCATAA 6152 36 100.0 36 .................................... CACGACGGGGAGGTCTATGACCTCCACCGTCTCATT 6080 36 100.0 32 .................................... CTCCTTCGTTTCCTCTCTGGGTCTTCAGGTTG 6012 36 100.0 35 .................................... CCCGACCGCGAACCGCGACCCGGACTCGATCACCG 5941 36 100.0 36 .................................... CACGACGGGGAGGTCTATGACCTCCACCGTCTCATT 5869 36 100.0 33 .................................... GGCGAGGCGGGTGTACCAGCCCAGCTCGAGCTC 5800 36 100.0 32 .................................... CTGAACACCACGTACGGGCCGGGGTTGGCGAC 5732 36 86.1 0 ....T.....T...G.......TG............ | ========== ====== ====== ====== ==================================== ==================================== ================== 13 36 98.9 33 GTCGCACCGCCCCAACTTTCCGCACCGGATTGAAAC # Left flank : GGCCGCGAGCGGTTGGACCGACAAAGACCCGACCGCCGGGTGATCAGCCGGCGTATACCGTAGCCGCCCCGCGGATGGTTGCGCCGGCGCCGGTCCCGGTGCCGACGGCCGGGGCTGGGGGCCGGGCAGGTCGACAGGGACGGCGACCCCATGTTCGTCGATGCGCAGCCGAGGCGGGTCCGTCATCGCAGCTCTCCTTATCCCTCATGGATGTGCCCACCGGCATCCGACGGATGATGGAGCGGTAACGGTCGGTCTCCGCCAGCGGAACGGGGTGATGCACGGATGCGCCTGGTTGTCAAACGTCCGATTCATGATCGTTGCCCCCAACCTCCGACACGCCGAAGAAGCGGGGAGGTTGTGGGAAAGATCTATAACCCTGTGACCTGTGCAAACATAAACGATCAAGAATTTCCGCCCAGTTATCCACAGCCCCTCCCGGCAGGTTGGGAGACGATCTTGCAAACGCCCAGGTCAGACCCCCCAGGATCCGTGGTACT # Right flank : CTCCGGTAGAGGTATGTCTCTTGCGTGGCGGTCGCGCCGTCCCGATCGGCGGTCGCGGTGTTTTTCCTCAGTCGGGGTAGATGTCGGTGGCGGAGAGGGGGCGGCCGGGTAGGGGGGTGCCGGGGCGGGCGCGTAGGCCGTCGAAGATGATTTCTCGGGCTCGGTCGTAGGACATTTCGGCGATCTCGCTGGGTGTGCGGTGGGTGCTGGGCAGCATCAGCAGTGAGAACAGGTGTGTGACGTCGCCGGTGTCCACGTCCGGGCGCATTGAGCCCTCTCGCTGGGCGGCTTGCACCAGGTCGTCGATCACCTTGATGAGTTCGTTGCGGATCTGCCGGATCGTCGGGTCGGCGCTGAGTGCCGCGACGGTTGCCGGTGAGAACAGGCGTTGGACGCGCAGGGTGAGGCTGAGTTCGCGGGATGTGCTCAGGGTGCGCGCGAGGGCGTCCCAGGCATGCTCGTGCTCGGCCCTGGCCTCGCGGGCCTTGGTCAGCATGACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCGCCCCAACTTTCCGCACCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.00,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //