Array 1 203401-201992 **** Predicted by CRISPRDetect 2.4 *** >NZ_UDHG01000008.1 Escherichia coli strain VREC0494, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 203400 28 100.0 32 ............................ GGATGCTTTGTGCAGGTCATTAATAGAATAAC 203340 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 203280 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 203220 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 203160 28 100.0 32 ............................ TGGTGGCCGGAAGAAGCTGATCACATCATGTT 203100 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 203040 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 202980 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 202920 28 100.0 32 ............................ GGAAAGTTAAGCGCCAGCGCGGCGTTGTGGGG 202860 28 100.0 32 ............................ GGAATCGCCCCTCGCTCTCAATCCAGAATTTT 202800 28 100.0 32 ............................ AGTCCGCGCGATTTCATTGATTAACCGGAACC 202740 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 202680 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 202620 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 202559 28 100.0 32 ............................ CACCGGGCCTGCTCAGTCGCGCCGACGTCCTG 202499 28 100.0 32 ............................ AGTTGAGTAGCGTGGGACGCGATACGCCCAGC 202439 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 202379 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 202319 28 100.0 32 ............................ AGTACGCTATTACGCTACCCTACCCAAAACAC 202259 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 202199 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 202139 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 202079 28 96.4 32 ..........................G. AGCAAGCTGTCTCGCCCCTTCGGGCTTCCAGC 202019 28 85.7 0 ..G.................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 213332-212462 **** Predicted by CRISPRDetect 2.4 *** >NZ_UDHG01000008.1 Escherichia coli strain VREC0494, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 213331 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 213271 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 213211 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 213151 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 213091 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 213031 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 212971 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 212911 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 212851 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 212791 28 96.4 32 ......................C..... TCATTGGAATACATGAGTTGCGCCCATTTTGT 212731 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 212671 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 212611 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 212551 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 212491 28 85.7 0 ....................T...C.CT | C,A [212465,212468] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 438852-439917 **** Predicted by CRISPRDetect 2.4 *** >NZ_UDHG01000002.1 Escherichia coli strain VREC0494, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 438852 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 438913 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 438974 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 439035 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 439096 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 439157 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 439218 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 439279 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 439340 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 439401 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 439462 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 439523 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 439584 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 439645 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 439706 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 439767 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 439828 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 439889 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 465619-466439 **** Predicted by CRISPRDetect 2.4 *** >NZ_UDHG01000002.1 Escherichia coli strain VREC0494, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 465619 29 100.0 32 ............................. CGAATATAGACCGGATACCCAACGTTTTTTAA 465680 29 100.0 32 ............................. CGGCGTGACACACATAGTCATTGTGTACGCTG 465741 29 100.0 32 ............................. GGTGTTAACCGGGTAGCGGCGGCCCTTCAGTT 465802 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 465863 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 465924 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 465985 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 466046 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 466107 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 466167 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 466228 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 466289 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 466350 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 466411 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //