Array 1 2844180-2842260 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010529.1 Haloarcula sp. CBA1115 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2844179 37 100.0 34 ..................................... TATATGATGCCACAGGAGTCGCAGCGGTAGCCAT 2844108 37 100.0 35 ..................................... ACGCCTGATGCAAACCGAACGCCACACCGACGGCG 2844036 37 100.0 36 ..................................... CGGTCGGCGAGCGTGTCCTCGCCAGCCTGGCCGAGC 2843963 37 100.0 35 ..................................... GGAGTTCGTGAACGGGACTGATAACTCAACATCCA 2843891 37 100.0 35 ..................................... AGACACCCATGGATACACGGCCCGCCAGAAATCCT 2843819 37 100.0 35 ..................................... ACGTCGATGTCGACGCTCCCGACCGATGTCGAGAC 2843747 37 100.0 35 ..................................... GGTACACCCTGCCGGTCCACAGTACCAACAACTGG 2843675 37 100.0 35 ..................................... TCGGCGGCCGTCTGCTTCGAAGCAGATTCACCCAT 2843603 37 100.0 36 ..................................... TGCATGACGGACGCAGCCGTTGTACTGCCAACGTAC 2843530 37 100.0 38 ..................................... TTCGCGCCGTCGGTCAGCTACGTCGCTGGCGAGGGCTA 2843455 37 100.0 37 ..................................... GCGTTGTATCAGACGACACCGCCGACGCGAACGCCGA 2843381 37 100.0 34 ..................................... AACTCTACCTCACTCACCGTCGCCACCTCCCGAG 2843310 37 100.0 36 ..................................... ACGGCGATGGAGCGTGACGGGTCGGACCCGCGAGCC 2843237 37 100.0 36 ..................................... CGTGGGGATGAGTGACGATACCGCCGAATCCGCCCT 2843164 37 100.0 35 ..................................... ATATCGGAACTGGAGCACTGCAGCAAACCGCCAAG 2843092 37 100.0 37 ..................................... ATGACGGTCGGCCGCTCGTCTAAGTCCTCGGCAAGCT 2843018 37 100.0 35 ..................................... TGCGCCATGAGGTTTTGTCCGGACTGCGGGGCACG 2842946 37 100.0 34 ..................................... GACACGACCGTCTTCGCCGCGCCGAAGGCCGCCG 2842875 37 100.0 36 ..................................... AGGTTGCCGGATGACGACGTGTCGACGATGAGTTCG 2842802 37 100.0 35 ..................................... CTGGTGGCGGCGTCGCCACTGGCTGGCATCGCGGC 2842730 37 100.0 34 ..................................... AGTAGCGGTGGCTGACGATTCGGCAGTAGATCGG 2842659 37 100.0 36 ..................................... CAAGCAAGCGAAACTATGCGTTAGGTGAGTTTAATT 2842586 37 100.0 36 ..................................... ACGGCGTGACCTATGTTGTCGGTTCAAGCGTTGAAT 2842513 37 100.0 36 ..................................... GCTCATCCTGGAGGATATACGATCATGAACCTACAA 2842440 37 100.0 35 ..................................... AACTCGATGATGATGTCCCGCTCGCTTGCCCACTC 2842368 37 100.0 35 ..................................... TAGACGGCTGTCGAGGGGTCAAGACTGACCGGGAG 2842296 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 27 37 100.0 35 GTCGCGACGTGGTAGAAACCCAGTGCGGGATTGAAAC # Left flank : CTGCAGCTGAAGGGGAGACGATTGCAAACTTTGGCGGGGGTCCGCGGGAGATTTTCTTAGCGTTCACGATTGCTGCATTGGTCACCACAGACCAGATCGACACGGTATTACAGTTCACTGATATCGATGGAGAGGTGCGACAGCTCCGACTACCGGAATTGATGACATCGCCGCCCTCGAAAACCCACACGACGCTGCAAACCGTCGCAACAGCAGGCCAGGAGACGACACTTCCAGAGATCGCAGAACAGAGTGGACAGTCTCGAAGTACTGTCGGTCGGCATCTTGATGCGCTTGAATCGGCCGGTGCTGTCAAAACAGAAAAGCGAGGGAAGACAAGACATGTTCAATTGACGCTGGGAGGGCAACTTCGGTTTGCTCGACTTGATTGATTCGTCGACCTTTTTGAAGGTCGTGTACGGCGGGGGTCCACGATCAGTTGGGTCTTTCTCACCGATTATGCGAAAGTTATAGACTCTCTGGTTCCAAAATCACCCCCT # Right flank : GCTGGGGATTCAGCTCAATCGCAGAGCCGTGTTTTATCATTTGTACTTTTGAAAACGTAGAAACAGGCCTCCAATTTTCACTTTCACTCTGGATGGCTCGCCCTTTTTATTGAACCTCAGTATTCCTCTAACAAGCGATGATCACTGACGCCAGAGCACTCCGGCCCGAGTACGTCCCAAGAGATCTCCACCATCGCGACGGACAGATAGACCATCTCTCTTCGGTTCTTGCACCATCACCTCTAAACCGTACCGAGGATATCTGTCTATTCGGACCCAGCGGCGTCGGAAAGACCACGATTGCGAAGTTCGTTCTCGGCCAGCTTGAAAGGGAGATGCTGGATCTTCGGTGGGGATACGTGAACTGTATGCGCGACAATAGCGCAAGCGCAGTACTGCACGAGTTCGCCCGCGAGGTCGGTATCGGTTCCGACCTCCGGAGAGAGGGAACCCCACGCTCGGTCGTGATCGACCGGCTTCGCAATCGTGACGAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGACGTGGTAGAAACCCAGTGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA // Array 2 2853939-2856578 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010529.1 Haloarcula sp. CBA1115 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2853939 37 100.0 36 ..................................... GGGTTCCACGTCACGTCAGTCCAGGCGATGTCTGAT 2854012 37 100.0 37 ..................................... TCGCCCGTAACGGTATAGAGCTTCTCTGTACTGAGCG 2854086 37 100.0 36 ..................................... CGGTCTTGATGGCGCGACGGTGGGATTCGCGCGTGC 2854159 37 100.0 35 ..................................... TCCGTAGTCGGCTGGGCTGCAACGACGTTCCAGAC 2854231 37 100.0 35 ..................................... TATCCGAACCCCATGCCCGATCTCGAGCAGCAGGA 2854303 37 100.0 36 ..................................... ATCACGACGTTGATTACCATAACGATAGCCAGCGCG 2854376 37 100.0 32 ..................................... CCGTCCTCGAAGCCGTCAAAAACGACAGTCTG 2854445 37 100.0 34 ..................................... TGTTGTTCATGTGACTCTCTCCGCCGTCTCACGG 2854516 37 100.0 37 ..................................... CGCAACTTCGCGAGCGACGTTCTCGAACCCGGCGCGG 2854590 37 100.0 35 ..................................... ATCGTTCGCGGCGCGGAGGACTCCAACGGCAACCG 2854662 37 100.0 34 ..................................... CGACCAAATCATCTCCCGTCACCCTCCGGTTCGG 2854733 37 100.0 35 ..................................... GCGTCTTCGCGAGTGTCAAGCCGCGCGACGGTGTT 2854805 37 100.0 32 ..................................... TTATCATAGTGCGCTGGCTCATCGCAATAGAT 2854874 37 100.0 38 ..................................... ATGGCGAGTAACACCGACCGTACCGGCGGCGCAATCGA 2854949 37 100.0 34 ..................................... CGTTCTCCGACGCGATCAACCAGGTCGAGCAGGT 2855020 37 100.0 34 ..................................... GTCCTGTTGGCCGACCACAAAGGGTATGAGTTTG 2855091 37 100.0 37 ..................................... AGCAGGCGTGAGCCTATCAGACTACGGAGCGCGGTCC 2855165 36 97.3 35 ...........-......................... TCGTTGGAGCGAGCGGATACGCGCCATATGTCCCG 2855236 37 100.0 34 ..................................... ATGGCGATGAGTGAGAACGAACTTGAGGAGGTGC 2855307 37 100.0 37 ..................................... CGTCGGTATCGAACTCGGTGCCACACTCGTCGCAGCG 2855381 37 100.0 37 ..................................... ACACGCGTGATGGGGCCGCCACGCTGGTCGTCGCTAT 2855455 37 100.0 35 ..................................... TGCTAGCCGTCACAGTGTTCTCGGCGGCGCTCGTG 2855527 37 100.0 36 ..................................... CGGTTTTGCGAACAACTCGCCAACCGCCGCGATGAC 2855600 37 100.0 35 ..................................... AGGCCCGGGGCGGTTCTCCTGCGGCCACGTCTCAA 2855672 37 100.0 33 ..................................... AGGATGTCCTGCTTGCCCCGTGGGCCAAAGAAG 2855742 37 100.0 37 ..................................... ATTATCTTCAAGATAGCTACCACCGAGGTAGCCAACA 2855816 37 100.0 32 ..................................... GGGCCGTCCGACTCGCGGAGCTTTTCGAGCAG 2855885 37 100.0 36 ..................................... GCTAAGTGGCTGTATCACCGAAACTGGGTAACAGTC 2855958 37 100.0 35 ..................................... CATATACGGCGGTTTAAGCCGCCGTCCGTTGCTCT 2856030 37 100.0 37 ..................................... GCGTCGTATCGCGACGCTGGCGTTCGGTAGCTATGTG 2856104 37 100.0 37 ..................................... GCGTCGTATCGCGACGCTGGCGTTCGGTAGCTATGTG 2856178 37 100.0 35 ..................................... AGACTCCGTTAGATGCGGTTTGTAGCCGCCAGAGC 2856250 37 100.0 34 ..................................... CATCTCCGCGAGTGGGAAATCGAACTCGTCGAAC 2856321 37 100.0 37 ..................................... ATCACCCTCGGGTCGGAGGGAAACGACTGTGCGGCCG 2856395 37 100.0 37 ..................................... TCTCTGGCCTCACTGTGTCGGATAACGCAGGGGCCTC 2856469 37 100.0 36 ..................................... AGCATGGCAATGATGGCGCTGGTCGTTCGCTCCGCT 2856542 37 86.5 0 .......................AC...A....CG.. | ========== ====== ====== ====== ===================================== ====================================== ================== 37 37 99.6 35 GTCGCGACGGGGCAGAAACCCAATGCGGGATTGAAAC # Left flank : GTATTTTGAGTACGAGGTGAGCCGACGAAAAGCGATCCACCAGCAATCGATTCTCCTTCGAAAAGCGATCACTGGGGAGCTTGATGCATACCACCCGTTGGAGGTCAGTCGGTGAGACTCGCAATTACCTATGATGTTAGTGACGACGCGAACCGGCGCCGAGTGTACCAGACGCTCGAACGGTATGGCGCGTGGCGGCAGTACAGCGTCTTTGAGGTTGATGTTTCGAAGGCGGAACGGGTCGAGTTAGAGGACGAACTTTCGAATCAAATCAACGAGAGCGACGGTGATCGGATCCGAGTGTATCGTTTATGCGAGTCGTGTCTTGATGATATCACTGACCTCGGTTCCGGCCCGCCCGATGACCAATCGAACGTGATCTAAGGGTAGTCTTCGTGGACCTTTTTTAATTCTGTGTACAGCAGGGGTCCACGAAGAACAGTTCTTGAATGACTCACCAAGCGCAATCTATAGGGCCTATGAAAGATATATTACCCCCT # Right flank : CTTATTAAACAAGTCGTAACAGATAGTCCGATTTCCACTCGAAACACGCTGTGTCTACGCACTGATCACGCCGTCCGCAACCACTATCCTAACGGAAACTGAAGTAATCGTAATGCGAATCGAAGCTACCGACGGGAACGAACACAAGGTCTGGCTCACCGACAGCGAAATCGAGGACCTTCGCCGCGCCACGAACAGCCAGCGCGACGACCTTATCATCCAACTGGGCGCGTTCGTCGGTCTCCGCGCTTTCGAGATTCCACAGGTCCGCCCTGTTGACGTGAAGGCGACCGACAGCGGACAGTACCGCCTCCGGGTTCGCGCCGGCAAGGACACCAGCGGCAACGGCGGGAAGCCCCGTGACGCCTATCTCCCCGACAGCGTCGAGCGGGACCTCCAGCGCTACCAGAACGAGCACAACATCGCTCCGAAGGACTCGTTCATCGACCTGAAGCAACCCGGCGTCCGCGCGGTCGTCCGGCGCACCGCTGCCCGAGCTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGACGGGGCAGAAACCCAATGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //