Array 1 32911-31968 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKNR010000029.1 Klebsiella pneumoniae strain 2020EL-00065 NODE_29_length_39781_cov_18.249559, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32910 29 93.1 32 ............TG............... CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 32849 29 93.1 32 ............TG............... CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 32788 29 93.1 32 ............AG............... AGCAACGTTTCCGGATTATATGGCTGGAACGT 32727 29 93.1 32 ............TG............... TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA 32666 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 32605 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 32544 29 96.6 32 ............................C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 32483 29 93.1 32 ............TG............... TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 32422 29 100.0 32 ............................. CGAAAACGGCAACCTTCATAAAAACGTCTTTT C [32411] 32360 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 32299 29 100.0 32 ............................. CAGCGTCTGAACGGACGAAACATCCCTGTTGA 32238 28 89.7 32 ..........-.TC............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 32178 29 100.0 32 ............................. GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 32117 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 32056 29 100.0 32 ............................. CACTACCAGATCCGAATGGACACCCGTAATGA 31995 28 89.7 0 T......................-....A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 95.3 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTGGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGCTATATATACAGTGTTTTTAAGTGATCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATCC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 546451-549100 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKNR010000002.1 Klebsiella pneumoniae strain 2020EL-00065 NODE_2_length_729643_cov_34.670442, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 546451 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 546512 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 546573 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 546634 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 546696 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 546757 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 546818 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 546879 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 546940 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 547001 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 547062 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 547123 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 547184 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 547245 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 547306 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 547367 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 547428 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 547489 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 547550 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 547611 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 547672 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 547733 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 547794 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 547855 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 547916 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 547977 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 548038 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 548099 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 548160 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 548221 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 548282 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 548343 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 548404 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 548465 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 548526 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 548587 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 548648 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 548709 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 548770 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 548831 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 548892 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 548953 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 549014 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 549072 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //