Array 1 963128-964480 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040927.1 Escherichia coli strain YY76-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 963128 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 963189 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 963250 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 963311 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 963372 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 963433 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 963494 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 963555 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 963616 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 963677 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 963738 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [963762] Deletion [963779] 963780 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 963841 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 963902 29 100.0 32 ............................. CGCCGCGCGGCCGGTGAGTCCGTGTTTTATAC 963963 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 964024 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 964085 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 964146 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 964207 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 964268 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 964330 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 964391 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 964452 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 990030-991339 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040927.1 Escherichia coli strain YY76-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 990030 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 990091 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 990152 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 990213 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 990274 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 990335 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 990396 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 990457 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 990518 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 990579 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 990640 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 990701 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 990762 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 990823 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 990884 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 990945 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 991006 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 991067 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 991128 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 991189 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 991250 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 991311 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //