Array 1 3958058-3952235 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019326.1 Halomonas sp. 1513 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3958057 29 100.0 32 ............................. ATTATTCGATTCACTGTCGAGAAGATGCTAGA 3957996 29 100.0 32 ............................. CTGAGCAATAAAAGCGGCCTCGCCAGCGGCAC 3957935 29 100.0 32 ............................. AACTTCATAGCGGGGTGTAGTGGTCATGTCAA 3957874 29 100.0 32 ............................. CCATGCCGGGTAACAAACTAATGCCCTGATGC 3957813 29 100.0 32 ............................. GTCGGTAGGCGAGAGGTCCGGGCCCATCGGGC 3957752 29 100.0 32 ............................. ATCTTTATTGTCCTTGCCAAATATCGCTAACG 3957691 29 100.0 32 ............................. CCACATATCAAAAGAATCGGGCGAAAAGGCTG 3957630 29 100.0 32 ............................. CCAGGGGCTGACCGATGGCATGGACGAGGCCA 3957569 29 100.0 32 ............................. GCGGCGGCTTGCTCGGCAGCGTGCGCCGTGGT 3957508 29 100.0 32 ............................. TGTTCAAGATGCTCTTCCGGCATATCTTTAAT 3957447 29 100.0 32 ............................. TATCCGCTCTTGCCGCGCAGGTACTCGGCCGC 3957386 29 100.0 32 ............................. CCTTCAGTCGAGCGCCTTTATGGTTGGTGGGT 3957325 29 100.0 32 ............................. GGGAACCGGGATCCTTGGCAGTGGGCTGACAC 3957264 29 100.0 32 ............................. GTAGACACCGGCGATGCTCGATAACCCCTCAA 3957203 29 100.0 32 ............................. GACAGCTGGGAGCGGCTCAAGTCGGCCTGGAA 3957142 29 100.0 32 ............................. CCGCCGCCCTGCTTGAGATTATCGATCGTCAG 3957081 29 100.0 32 ............................. ACCATGCGAGGCTCCGCGCTGCATGGCACGTC 3957020 29 100.0 32 ............................. GCCGAGGAGGTGGACGGCCAGCATATCCTCGC 3956959 29 100.0 32 ............................. ATTCATTAATGTTTCTACATCTTCTTTAGTCT 3956898 29 100.0 32 ............................. CCGCCCCAAGCCCTGGCCAGGAGGATGCATGA 3956837 29 100.0 32 ............................. GACGGCTTCGTCCCTGGTCAGCGCGTGACCCC 3956776 29 100.0 32 ............................. CCGATGATTTCATTGTCAGTCGATTTGTTGTA 3956715 29 100.0 32 ............................. GTTGAACACGTTGTCAGTAATGAAAGTACCGT 3956654 29 100.0 32 ............................. CAATCAGACCAATATCAGAGAAGTGATTTCCT 3956593 29 100.0 32 ............................. GCGTCGTCGCTGATGGCGTCTTTGCCGCCCTG 3956532 29 100.0 32 ............................. GCATCGCTAGGCAATCGCACGGTCACACGTAG 3956471 29 100.0 32 ............................. TGGTAATGACCCTCACCCGCGACGCCATTCTG 3956410 29 100.0 32 ............................. TCGTCACTGCTCCAGCGGCAATAGCTCATGCA 3956349 29 96.6 32 ............................T CAAGTGCCTCGTGGCGAGGTCGTCAATATCGG 3956288 29 100.0 32 ............................. TCTCGCCCATGCTCCGCAGTAGCGCCCGCATT 3956227 29 100.0 32 ............................. CCTGCTCGACTATCTCGGCATCGGTTCGCGCC 3956166 29 100.0 32 ............................. CTCATGCCGACACCAGTTGCACGCTGCGCTGA 3956105 29 100.0 32 ............................. CCGACGACCGCCCTGATGATCGCAGGCCTAGC 3956044 29 100.0 32 ............................. GATACGCACATAGAAAAGGCCCCGTCCGTGGC 3955983 29 100.0 32 ............................. CGGCCAACCTCGTCTCGAGCCTGATCGGCGAC 3955922 29 100.0 32 ............................. ACGCTTCATAATGGCTCCTACAGACTTCATTC 3955861 29 100.0 32 ............................. TTCTTCCATGATTGCTTTCTTAATGACTTTAT 3955800 29 100.0 32 ............................. ACAGAGACAGACTACAATCGTCGTCTCACTGT 3955739 29 100.0 32 ............................. CCAATCGCAACAGAGTCGTCGCAGTCCCTCCA 3955678 29 100.0 32 ............................. ATCTTTGTAACTTTCATATAATGACTGATCTT 3955617 29 100.0 32 ............................. CGACGGGGCCTAATATTGATCAGCTGTAGACG 3955556 29 100.0 32 ............................. GCTCATCAATGACAGTGAGTTCATGCGACAAG 3955495 29 100.0 32 ............................. CTTCAAATGGTGGAAGTTCCAAGATCCTGAAG 3955434 29 100.0 32 ............................. AGTTGGGCCGAGTATTATGAGAAGAATCGCGA 3955373 29 100.0 32 ............................. ACCCAACCCCTGCCCGCCATCGTGCGGGCTTT 3955312 29 100.0 32 ............................. GTCGCCGTCAGTCGGTTTAAATCGGAACGTCG 3955251 29 100.0 32 ............................. AGAGATCTGAGGGCGCCTCAGTCGGCATCATT 3955190 29 100.0 32 ............................. TTGGTCGAATGACCATCACTCCAGAGATGTTA 3955129 29 100.0 32 ............................. GCCGAGGTGGCGATGATCCTCGCTCAGCTTGG 3955068 29 100.0 32 ............................. ATATTGAGATTACATTGACTTTATCATAATCA 3955007 29 100.0 32 ............................. AAAGTAAAGGGAAAGTAACAGTAGACTGGAAT 3954946 29 100.0 32 ............................. CCGTCAGCAAATACTGCATCCGTTGCGGCCCG 3954885 29 100.0 32 ............................. TTGCCGGTATCCTTATCGCGCCCATACTTGCG 3954824 29 100.0 32 ............................. CCGATGATTTCATTGTCAGTCGATTTGTTGTA 3954763 29 100.0 32 ............................. GTGATTCCAATGATTCTATCCCTAGCAATAGA 3954702 29 100.0 32 ............................. ACTCCACCGAATCGATGAGTTGCTGTTACAGT 3954641 29 100.0 32 ............................. CCGATGATTTCATTGTCAGTCGATTTGTTGTA 3954580 29 100.0 32 ............................. CTCACACAGGGGTTCTGGCACAGATGGGTGAT 3954519 29 100.0 32 ............................. TTTTATATTCTTATTTATCCAAATAGGATGAA 3954458 29 96.6 32 ............................T AGAACAGCGATTAGCGTTGTTACGAATCAAGC 3954397 29 100.0 32 ............................. GTTCAGTGAGAATCGAGAACAAGATGAAATCG 3954336 29 100.0 32 ............................. CCATACAAGCTATTGAATTCTGTATCAAGATG 3954275 29 100.0 32 ............................. TCCATCGTCCACGTATCCATGCGCGGATTGTA 3954214 29 100.0 32 ............................. ATTCCCTAGAAACTTTGGCAATTGAAGTATGG 3954153 29 100.0 32 ............................. ATATCCGCGATATTGTCTCCAATTGAAGCAAG 3954092 29 100.0 32 ............................. GCCGATATCGGTGAGCGTCACATTGATAAGGC 3954031 29 100.0 32 ............................. GTCGACCTACGATCGCGCAAGCTGCAGCAGCG 3953970 29 100.0 32 ............................. CCGAGGGTGCTCACGACGCCAGGTTAGTAGAC 3953909 29 100.0 32 ............................. CCGATATGACTGACAAAACAGTTACCGTCCGC 3953848 29 100.0 32 ............................. TCTCAGTTCCTGATGGGCGACAATCACTGGTT 3953787 29 100.0 32 ............................. TCCGAGGCCGCCGCCTTCATCGAGTTCTTGTA 3953726 29 100.0 32 ............................. CCTATTCTGTCAGACGGAAACTTTCATTGGGA 3953665 29 100.0 32 ............................. CAATAACGCTGCGGTAGTTGACCCTTGCACCC 3953604 29 100.0 32 ............................. ATTTCCGGGCCGTTTCTTTAACTCGCTCGACG 3953543 29 100.0 32 ............................. CGCCGCGGCGGACAAGGTACGTGCCTACTGCC 3953482 29 100.0 32 ............................. GCCGGATACGCGAGACCCTGCCCGTCATCCCC 3953421 29 100.0 32 ............................. ACCAGCGACGCCGTCTATCGCTACGTGCGCGT 3953360 29 100.0 32 ............................. TGCCAGGCATCACCGAGACGGCGGCCGTTTCT 3953299 29 86.2 32 .........A......T....A.G..... CCATGCAGGGCTCGAGGTTGTGGCAAGACCAC 3953238 29 86.2 32 .........A......T....A.G..... GAGTTGAACGCCGCCCGCCTACAGCTCGACAT 3953177 29 86.2 32 .........A......T....A.G..... GAGTTGAACGCCGCCCGCCTACAGCTCGACAT 3953116 29 86.2 32 .........A......T....A.G..... TAGTCGGGAGGCAGTCTCGCGAGGTCTACAGC 3953055 29 86.2 32 .........A......T....A.G..... CCTGTAATGCGGCGCGTGGCCCAGTCGATGAT 3952994 29 86.2 32 .........A......T....A.G..... GGCGGCATAGGCTTCGTCAGCGTCAACAACGC 3952933 29 82.8 32 .........A.C....T....A.G..... GCAGCGGGTAGGGCTGGCCAGGGAAGTGAAGA 3952872 29 86.2 32 .........A......T....A.G..... ACGCAGGAGGCCAGCACGACGCGAAGCGATGG 3952811 29 86.2 32 .........A......T....A.G..... CGGGACAAATCTCGGAGCGCTGTAAATGACCA 3952750 29 100.0 32 ............................. GCCCTGATCCTCGATGCCGTCGAGTCCGAGAA 3952689 29 100.0 32 ............................. TGCCAATGAGGCGTGCCGTCGTGGTGGGGCTC 3952628 29 100.0 32 ............................. TCATGTCAGCCCGGGTGGCCTTCGTGCGCGAG 3952567 29 100.0 32 ............................. CGCGAGCGCTACGCCGAGCTGATCCGCACGCT 3952506 29 100.0 31 ............................. GCCTGCTGTTCAGTTGGACGGCCCGCCTGTG 3952446 29 89.7 32 ................T....A.G..... GTGGTCTTCAGGTTGTAGAAGATCCCCTCGAG 3952385 29 82.8 32 .........A.....CT....A.G..... AACGCGAGGGCGTCCATGTCCTTGGTGTCGAC 3952324 29 93.1 32 T...........T................ CTCACTGCCGGCGATAACGGGGCGGGCGGGTA 3952263 29 86.2 0 ............T..........G.G..A | ========== ====== ====== ====== ============================= ================================ ================== 96 29 98.1 32 CCGATCCCCGCAGGCGCGGGGCTCAACCG # Left flank : TGGGGAGATTGAACCGCCTCCTCCCGCTCCGGAAGCCGTGCCTCCAGCGATTCCCGAGCCGCCATCCATCGGTGATAGCGGACACAGGAGTGGATGATGGCCATGCTCGTGGTAGTGACTGAAGCCGTGCCGCCTCGTCTAAGAGGTCGACTTGCCGTCTGGTTGCTGGAGATTCGCGCCGGAGTGTATGTCGGAGATGTCAGTAAGCGAATCCGCGAAATGATCTGGGAACATGTCAACGTCCTGGCGGAGGATGGCAATGTCGTCATGGCTTGGGCCAGCAACCATGAGTCTGGCTTCGAGTTCCAGACCTATGGCTCAAACCGGCGCGAGCCTTGGGATCACGACGGTTTGCGTCTGGTGCGCTTTCTGCCTGTCGAGGCTAAATAGTTGATAATCCTAGATCTTTAAAAATTTAGTCTGTACAAAAAATAGGCAAAATCGTTGGTGGAATTTCTGCTGGCGATTTTCCTTTTGTAGATCAACTATCTACAATTAGT # Right flank : CAAAGCGGTAACGAGTTGATCTGAGCCAGGTCGGCCCTGGGGTGGCGGTGTGATTAGAGCTTGGACGAGCGACCACTGATCCGCTGATTGAGGCTGATGGGTTGTTCGCCGGCCTTGATGGCTAGCTTACGGTGCTCATCTGACGGATGCGGACGTTGAAACGCCCGAAAAATGACGTTACGCCAGCGGCTGGGGAGGTGATTCCCCGGCAGCTTGCATATCGGCCACCGCGTCGGCCACTACCGCCACGATGCCGTCGAGGGCTTCTCTCTGGCTGTTGGCCAGCCATGAAAGGCTGGGTAGCTCGGTGCATAGGCCGACGAACTGTACGTCTTCCGTGGACCAGCGGATGCGGTAGGCGTAATACGTATGGTTGACCATGTCGCTCCCCTGTCATTGTGGCCACCTTAGTTTAGTTGGATTTTTGGCGGCATCACTACCCACTCGGGCTCGTCGAATTCGCCGATCAGGCGGATCTCGCAGCAGGGCGCCGCGGAGCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCAGGCGCGGGGCTCAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGATCCCCGCAGGCGCGGGGCTCAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //