Array 1 10962-11539 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNGH01000021.1 Halomonas pantelleriensis strain AAP, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10962 29 100.0 32 ............................. GCGCGTTTGGCGCGTCGGGCATTCCCTGGCAC 11023 29 100.0 32 ............................. CCGTGGCGGGTGGTGCGTCAGCAGGCAGAACC 11084 29 100.0 32 ............................. TCTACAGCCGAGATCGCCACCAACGCCGACCT 11145 29 100.0 32 ............................. ATCGAGCTGCGCCACGAGATGCGCCAGGAGCA 11206 29 100.0 32 ............................. TGAACAGCGACCAGGCGCGGCCCCTTGGGGAT 11267 29 100.0 32 ............................. TATCACCGTCGAGCTGGCTCGCCGCGAGCTGC 11328 29 100.0 32 ............................. ACCTTGGGGGTGAGGCATGAACGCACCCCTGG 11389 29 100.0 32 ............................. GTCTATGCGAGCGCAAAGCGTGCGTTTGGCAA 11450 29 100.0 32 ............................. GCATCGCGCAGCCACTCGATGGACACCTCGCG 11511 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 33 CCGATCCCCGCAGGCGCGGGGCTCAACCG # Left flank : CAGATCAATGCCCTGGCGGAGGATGGCAATGTCGCCATGGCCTGGGCCAGCAACCATGAGTCCGGCTTCGAGTTCCAGACCTATGGCTCAAACCGGCGCGAGCCTTGGGATCACGACGGTTTGCGTCTGGTGCGCTTTCTGCCTGTCGAAGCTAAATAGTTGATAAAATTGGATCTTTAAAAATTCAGTCTGTACAAAAAATAGGCAAAATCGTCGGTGGAATTTCTGCCGGCGATTTTCCTTTTGTAGATCAACTATCTACAATTAGTCCGATCCCCGCAGGCGCGGGGCTCAACCGGGGGTGCGCCATGTTCGTGAAGCTGCTGCGCCCCGATCCCCGCAGGCGCGGGGCTCAACCGCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTC # Right flank : GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCAGGCGCGGGGCTCAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGATCCCCGCAGGCGCGGGGCTCAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [6.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14277-15361 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNGH01000021.1 Halomonas pantelleriensis strain AAP, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 14277 29 100.0 32 ............................. CCGGGATCCATATCCCCATGCCACCCAACCTG 14338 29 100.0 32 ............................. GCCACATCCTCTACCTTCCTGCGCACGGCCTG 14399 29 100.0 32 ............................. TTCCGTCACGTTCTTGATGCCCATCGTGCTTT 14460 29 100.0 32 ............................. TCAGCACGGCTTTCGTCATATTGCCCTGGGCC 14521 29 100.0 42 ............................. GCCGAACTGTACGGCGATCATTCCAATATCCCCCGATCCCCG 14592 29 100.0 32 ............................. GTCAGGGTGTCATTGAGTGCGTATCCCGTCTT 14653 29 100.0 42 ............................. GCCGAACTGTACGGCGATCATTCCAATATCCCCCGATCCCCG 14724 29 100.0 32 ............................. GTCAGGGTGTCATTGAGTGCGTATCCCGTCTT 14785 29 100.0 32 ............................. TGCCAGAACTTGCGCTCGGGCAGCAGCTCCCC 14846 29 100.0 32 ............................. TAGCGTTGATGGTTTAGACATCGCAACCACTC 14907 29 100.0 32 ............................. ATCTGGGAGTCAGTTGGTCGCGTGGTAGTAGC 14968 29 100.0 32 ............................. GCACACGCGGCGATAAATGGGGCGCTCGATTT 15029 29 82.8 32 .........A....T.T....A.G..... GTGCCCTTGCCGGTGGGCTGGCCGAACTTGTC 15090 29 82.8 32 .........A....T.T....A.G..... GCGGCCGGGGTACGCTGCGGGTCGAGCAGCTC 15151 29 82.8 32 .........T.....CT....A.G..... AATGCCACGCCTGCCCTGCGGGCTGAGTTCAA 15212 29 86.2 32 .........A......T....A.G..... AGGCGGTCTTGCAGGGACTGGAGGGATTTGGA 15273 29 86.2 32 ................T....A.G.T... GATGGCAAGGCAGAGTGGCGCCGGATCGTGAC 15334 28 89.7 0 ......................-.TG... | ========== ====== ====== ====== ============================= ========================================== ================== 18 29 95.0 33 CCGATCCCCGCAGGCGCGGGGCTCAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGT # Right flank : GATGAATATCAGTTCACACCGCACGGCTTAATGAGCATCGGGTTTGAATGCCATGGCTTCATCGAAGCTGTACAGGCAGGTATCAGGAAAGGCATCCGGTTCCATGTCGGTCTCGATTGCTGCGGCTCGCCGCGCATCGTCATAAGCACTGGCCATCAGATCGGGCAGCGCTGCCCTGAGGCTCGGGTTGTCGGCAAGTAGTCGAGCGGCTTTGACCTGAGCATCCTGAATGGTCAGGCGCCAGCTACGCGAGCGGCGGTCAGGCTGATATTCCCATTTCAGCAGATGCATCAGGAGCCGGGCCAACTGACTGATAAGGGCGCGTCGTTCGCTCTTGCCCATGCTCTCGATCTCCTCGGCAAGATGTTCGACATCGAGCTGATCCATCTTTCCAGAACGCAGCAGCGCTGCCTGCTCCAGCGCCCAAGCATAGGTGTCCTGATCGTAATGCGTCGGCATCGCTTGGCTCCAAGGTTCTTGCCACGTTGGTTATTAACATC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCAGGCGCGGGGCTCAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGATCCCCGCAGGCGCGGGGCTCAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //