Array 1 147321-147529 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITE01000051.1 Hafnia alvei strain PCM_1196 813, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 147321 28 100.0 34 ............................ GACGCGGGTGATGCTAGAGATATCTACAAATAAA 147383 28 100.0 32 ............................ ATTTACCGAAGAAATACGGCCGCTATAGACGC 147443 28 100.0 32 ............................ ACGACGACTGACACAACTAGTCGCGCCCAAAA 147503 27 82.1 0 ...........C.........CC.-..T | ========== ====== ====== ====== ============================ ================================== ================== 4 28 95.5 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTAACTTTCACCGGCAAAGTGCGCAATCACAATCTTGGTGATAACGTTAGCGCGTTAACCTTAGAGCACTATCCTGGGATGACGGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGCTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCATTGGCGCAATGTATCCCGGAGATGAAATTGTATTCGTTGGAGTGACCAGCGCACATCGCAGCATGGCCTTTGATGCCGCTGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCGTTTTGGAAGCGAGAAGCCACAGAGCAGGGCGACCGCTGGGTCGACGCCCGCGACAGCGACCAACAAGCGGCAAAACGCTGGTAAATCCTTTCAACCCTTTTTTCTGCCCTCACGCTAACTCATTGATTTTTCATTCCTCCAATGAACCGTAAGAAAAAAGGGTTAAATTCCCAAAAATGAGCTACCGATCTGATTAATCGACGCTTTCTGCGAATATCCTACA # Right flank : TCATCTTCTGTCCCATTTTCACTATACTTATTTCAGCACTGCACCATTGTTGCAGTATTTGAGGTAACTTTCGTAGAGGTAAGGGGCTAATTTGATTTGGTTTGAGCAAGGTCTTTATTTGCGGATTGAAGAGTTGGAGAATGGGCCACGGCCTTTGCCGCTGCGTAGCGGGTTTAGTCGTGAAATAGCCTATCGGGCGCTAGGTGTGTTTAATCCCTCTGAATCATCGGATGCTTACTACATATTATCTAACGATCGGGATGAAATATGGTTTATCTGCAATCGACACTTACGAACGGTTGCGCTTTTGCCTGATACCACTGACTTTAGGCGTCCGATTACCGATTGATTATGGACGTGGTTGTCATTTTATCTGTTTTAATTTGGATATAACTTTTTGTTAAGAACTTTAACGATACAAAAACTGCTCATTGGCACCTTGTACCCGAGTTATTTTCCAACCGTCCTGCCAGACTAGCCACAGAATGATATGTTGCTGG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 222387-222594 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITE01000051.1 Hafnia alvei strain PCM_1196 813, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 222387 28 100.0 32 ............................ ATTAGCATCAGGAAGAACATTATTTACTGATT 222447 28 100.0 32 ............................ TAAGGGCGCTGGCGCGTGTTTGGGCTGTGCAG 222507 28 100.0 32 ............................ GTCATCGTGTCAGTCAGCGGCGGCAAGGCAAC 222567 28 96.4 0 ....................A....... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AATAGATTGAGTCATTTTAAACCTCGAGAGTGACTTATTTAATGACTACCACTGAGACGCTAAACTCGGGTGGCAGCTCAGATAGGGTTAGCGTCACCGACACTCTCGAAATCAGTGCTTCTTGCGAAGCCCCTGCCTGAGCCACCATTGTTCGGGTGAGTCTAAGCGCACTGCATTATGGCATAGTGCTGTCGAGAGATGTATTGCGGAACGCTAATCCGACTACGGATTTTTCCGTAGCCAGAAAACTATATGCTCGTGATTTCAACAATGAAATGGGCTGGATGCACTTACAGTGAGTTACTGTTAGATATGGAATCAACTTCTCGGAAATGAGGGGGTAAAATGCAAAAAACTTTATTTTCCAGCCAACCCTTTTTTTTGCCTGCCTATAACCTATTGATTTTATATAAATGTTCATCAGAAATATAAAAAAGAGTTATGCAGTGAAAAATGAGTTACGGATCTGATTATTCGCATCTTTATGCGAATATTCTACA # Right flank : ATTCTGCGCGGGTTTCTGCCCGAGGGACAAAACTCTGGAATATAAAATTGGAATTTGACACTCACAGGGATGGGTAAGATGATTAGGGTTTTGATATTACTATTCTTTATTTCTTCACCTGCCTTTGCTGTCAGCGATATTAACAACGCCGCCAAGGTGGCTCTAGGATTCAACAAATGGTATTTGCAGCAGATTGAAATAGATATCTATCCGCTGCTAGGAAGTCGTAGCCCAGAAATGAGTGAATACGTAACCGCAGAGACGTTGGGAAAGCTGCATAAGGCAGTGAATAGCGATGATGAATTCTATGACGCTGACTTTTTTACTCGCTCACAGGACATTGGGGCTGACTGGCCGAAAAATGTCATAGTGGTTTCTTCCGATCTCGATCCGGTTTGCCTGAATGTTTATGTTTCTTATGGGAAAGATATGTCCCACACGGTCATTGACTGTATGGTGAAGGAAAAAGGGAAGTGGAAAATCCAGTCGGTAGCGCAGCA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //