Array 1 28489-30318 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWBW01000054.1 Halomonas coralii strain 362.1 scaffold_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28489 28 100.0 32 ............................ TGGGACCGCCCGGTGTTCATCGAGGCCGGCAA 28549 28 100.0 32 ............................ TCCCCGGTGGCATCCCGCAGGGTGCCGGAGAG 28609 28 100.0 32 ............................ ACGCAGGGCGCCGGCAGCTAGGCCCTGAGTGA 28669 28 100.0 32 ............................ CGGAAGCTCAGGGCATGCAGGTGCGAGCGGGC 28729 28 100.0 32 ............................ TGCAGCTCAACGGCAGCCAGGTGAAGCTCGCC 28789 28 100.0 32 ............................ TATTTCGAGCCCTACCGTCGGCGCATCCACAC 28849 28 100.0 32 ............................ CTTGAGTAGCCGTAGGATCACCCCCAGCGGCT 28909 28 100.0 32 ............................ ATATCAAGTTGTGCGATTACCAGGTCGCTGTT 28969 28 100.0 32 ............................ TGTAACCGCAAGCGTCCGGCTCGGGCGCTCCC 29029 28 100.0 32 ............................ TCGGGGTCGATGACGATTCTGTCACCAGACAT 29089 28 100.0 32 ............................ TTCGAGGCCTGGGTGATCGCCCTGCTCACCCG 29149 28 100.0 32 ............................ ACCTGGTCCAGCAGCTCGACTACCTCTCTGCC 29209 28 100.0 32 ............................ GCGAATGCCACGCGGCCGATGGCGTCCCGGTC 29269 28 100.0 32 ............................ ACCCAGATTGCCGCCCGCACCGCCGCCAGTAT 29329 28 100.0 33 ............................ GTGTTCAAGGTCAACCGTACCCGTAGCTATCAA 29390 28 100.0 33 ............................ CCCCCGTCGGGGTTGCCGGCGTCTTCGAGCGTT 29451 28 100.0 32 ............................ TGCCACGGCCACTAGCAAGCCGAGTTCCTTGG 29511 28 100.0 32 ............................ CAGACAATCGGCATCCCATCTCGCCGGGCGAT 29571 28 100.0 32 ............................ TGGACGACTCGCCCGAGGAAGTCGCCCGCCGC 29631 28 100.0 32 ............................ TCACGCGCTGCTGCGCGATCGGGCCGTAAATG 29691 28 100.0 32 ............................ GGACGGCCTCCTTTCGCCCTGCAGTGGTGGCG 29751 28 100.0 32 ............................ TGAAGGAAATTGCCGATGCGCTCATTCGTGTC 29811 28 100.0 32 ............................ AGACGCTGGTCGATGCGTCCGCACTTCTGACA 29871 28 100.0 32 ............................ GTCCGCACCGCGTCGCGCCACGACTCCATCGC 29931 28 100.0 32 ............................ TCATCGAGGCGCCGCCAGCCAGCGGCGCCCCA 29991 28 100.0 32 ............................ TGGGGATTACGTCACCGTCGACGAGGCGGGGG 30051 28 100.0 32 ............................ TCGAGAACGGGGTCCATGCGGGCGAGCGAACT 30111 28 100.0 32 ............................ GTAGACATCGCGGATGCGATCGATCCGCACGA 30171 28 100.0 32 ............................ CATGGCCAGTAGTTTCGTAACGGGCATGTCGT 30231 28 100.0 32 ............................ TGTCATTACCGGCATTGGTGCGGACGAAGACC 30291 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 31 28 100.0 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : AGAGCCTGACGCAACTCATGGCGCAACCCTGGCTCGCCGGCATGCGCGAACTCGTCGAGACCGGCGACATTCTGCCAGTACCAGACGGAGTGCTGCATCGCGTGGTCAGGCGCCGGCAGTTCAAGACCGGCAACGACAGCCAGGTGAAGCGCTACGCACGGCGGCATGCTATCGACCTCGAAGAGGCGCGAGCGAGGTTCGCACGCAGCAACGAACCTCGCATCAACTTGCCCTTCGTTTCACTCAACAGCCGGTCCAGCCTGCAACGCTTCGCCCTGTTCATCGAGCATGGCGAACCGCAGCCGACGCCGGCTGTTGGCTCCTTCAATCACTATGGCCTGAGCCAGGGGGCAACCATCCCCTGGTTCTGACCCTTTTTTCGTGCGTTTTTATAGCATTCGGAAAAACAAGGGGTTAGCGACGCCTCCACAAAAAGGGAGGCGTCGCGCTTCATGGCTATTGCTCTTTAACAATCAGGGTATTAGCTTGAAAAAGCTCTA # Right flank : ATGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 28-2698 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWBW01000025.1 Halomonas coralii strain 362.1 scaffold_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28 28 100.0 32 ............................ TGTCGCCAGGAACGCAACATTCCAAGGAATTA 88 28 100.0 33 ............................ ATTCGCCGCTACGTCGGCGGTGACCTGCTCAAC 149 28 100.0 32 ............................ AACCCCGAGCATCGCCGCGCCGAGCTGATGCT 209 28 100.0 33 ............................ CAAAAGCGTGCTTTAGGTATTCTGTGGCGAGGT 270 28 100.0 32 ............................ TCTGACCGTCAAAATGTCCCCCCTTTCAGCAT 330 28 100.0 32 ............................ ACCGGGATTGGCGGCGCCGTGGCCGAGCATGT 390 28 100.0 33 ............................ AGATAGCCGGCATCCGACACCTGCTCGGTGCCG 451 28 100.0 32 ............................ GCAGCCCGCGCCGCCTTCTCCAGCAGTTCCTT 511 28 96.4 32 .................A.......... CTCAGTTGCCCCTGCAGGGCCGCGTGCAGCCG 571 28 100.0 32 ............................ AAGTGGCGTGCCATTGTACGTAAGAGCGGCCA 631 28 100.0 32 ............................ TCGCCCTCTCGCTTCACGTCCACTACCTCGGC 691 28 100.0 32 ............................ TGAACCAGAAACGCTCAATGACGCCCCGAGAG 751 28 100.0 32 ............................ GTCCCACCCGCATAGTCCAGCTCGCAGAGCAC 811 28 100.0 32 ............................ TCGCTAACGGCACGCTCGTACTGAGTAACACT 871 28 100.0 32 ............................ GCTATAAATGTTCTTCCCGAGGCTGGCAAGAT 931 28 100.0 32 ............................ AACAAGACCGCCGAGGTCAACGCCAAGCGCCA 991 28 100.0 32 ............................ TCGAGCAGCATCGGCAGCGCCGCCGGGGTCTG 1051 28 100.0 32 ............................ TTGAGGCGGCGAATCTCCCGCCATACGGTGAC 1111 28 100.0 32 ............................ GCAATGCGGGCATGTCACTGTGCCGATGATTT 1171 28 100.0 32 ............................ CATGTCCTCGATTACATGGTCGGCATCGAGAA 1231 28 100.0 32 ............................ GCCGCGCAGAACCTCACCGGCCGCCGACACCG 1291 28 100.0 32 ............................ TCGACCCGCTCGAACGGCTGGACGAGGCGCAA 1351 28 100.0 32 ............................ CAATTGCGCAGCGCCCGGGTCGTCGCCGCCGC 1411 28 100.0 32 ............................ AACCTGAAAATGGCGACCGAGCGGCAGTTCGC 1471 28 100.0 32 ............................ GGGAACGTGCAGCACTGCCGATACGCCGAACT 1531 28 100.0 32 ............................ GGCCAGCTCGTCGAGATCAGCGAGCGCTTGCG 1591 28 100.0 32 ............................ GACTACCAGCGCTGGGAGCGGCGCCAGCACGC 1651 28 100.0 32 ............................ TATCGCCGTCCCGCGAGCAGTGAGAACTGCCT 1711 28 100.0 32 ............................ TGCACCTCGACGTGCTTCTCGCCGGCGGCCTG 1771 28 100.0 32 ............................ GAGTGGACCGACTACTATGCCGGCCAAGTGCG 1831 28 100.0 32 ............................ CCCGAAAAGCCCGAGCCACCCACCGGCTATAC 1891 28 100.0 32 ............................ GTTGGAAGTGGATCGGCCAGCAGCAGGGCAGC 1951 28 100.0 32 ............................ TGGGTCGATCCCGGCGTCACGCATCATCTTCC 2011 28 100.0 33 ............................ TGGGATGCTTTAACCGCAGCCCTTGCCCTCGCC 2072 28 100.0 32 ............................ TGATGCTGAGGCGCAGGGCTAGGCTCGACAGG 2132 28 100.0 32 ............................ ATGCTCAGTACATGGACAAGCGGCGGGAGATG 2192 28 100.0 32 ............................ AATCTGCACAGCCATTCAGCCAGGTGCGCATC 2252 28 100.0 32 ............................ GACAGCGTGCTCGATGAGATGGGGATCAGCTG 2312 28 100.0 32 ............................ ATGGGCGGTAGCTCTAAGAGCAAATCCAGCTC 2372 28 100.0 32 ............................ ATGGGCGGTAGCTCTAAGAGCAAATCCAGCTC 2432 28 100.0 32 ............................ ACATAGCCCTCGTCCAGCGAGGCGTGGTACCG 2492 28 96.4 32 ......................G..... GGCGCACCGCCGCCCGACTACAAACCGCCCCG 2552 28 100.0 32 ............................ AGCCGCTGGTCCCGCTGAGCGCTACCCAGCCC 2612 28 100.0 32 ............................ TCTCCATGCGCCGCCGCCCGGCCGAGGCCTAC 2672 27 85.7 0 ....................-..C..GC | ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.5 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : TCGGCGCGGGCGTGGCGGTGTCACCGCG # Right flank : CGTCATTCCACACAGGGGATGGACGCTCGTCTTTCTAGCCCAGCTTTGCCGGATCGGGTGAGGTCGGCGCTTGCGCCGCTTTTTCGGTGGATTCGTCAGGTGTCTTTGCCCCGGCACTCAACCGCCAGTCGATATGCGCGAGAAGCAGCAGTTGCAAGGCGAGGAAGGCGAAGCAGGTGGTGACACTGAGTGTCATGGGGGCGTACTCGAAAACGGCGGATGCCGCGTCTGGAGTATAGCCGGTGCGGGGCGTTCGGTGGACAAGGCGGGCAGCCCGCCGGAGCGGGCCGCGGGACTCAGTGTTCGTCGTTCTCGAAGCGTTCGGCGGCGCGCAGGGCGTCGTCCTGGGTGTCGTGCTCGGAGACGACGTTCTCGTTATCGGGCTGGCTTTCGTCGATCACCACCCAGCCGGTCACTTTCTCGTTCATGGCGCGGGCGGCGAAGACCGGCTCCACGCGGGCTTGTTTTTGCATGGTCGCTCCTTGACGGATATCGCGAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1115-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWBW01000060.1 Halomonas coralii strain 362.1 scaffold_61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1114 28 100.0 32 ............................ TGTCGCCAGGAACGCAACATTCCAAGGAATTA 1054 28 100.0 33 ............................ ATTCGCCGCTACGTCGGCGGTGACCTGCTCAAC 993 28 100.0 32 ............................ AACCCCGAGCATCGCCGCGCCGAGCTGATGCT 933 28 100.0 33 ............................ CAAAAGCGTGCTTTAGGTATTCTGTGGCGAGGT 872 28 100.0 32 ............................ TCGAGAACGGGGTCCATGCGGGCGAGCGAACT 812 28 100.0 32 ............................ GTAGACATCGCGGATGCGATCGATCCGCACGA 752 28 100.0 32 ............................ CATGGCCAGTAGTTTCGTAACGGGCATGTCGT 692 28 100.0 32 ............................ TGTCATTACCGGCATTGGTGCGGACGAAGACC 632 28 100.0 32 ............................ ATGCTGGCCAACTCGTCAACCGATTACTCCGA 572 28 100.0 32 ............................ ACCTCGCGAAAAAGGGGTAGCTCGACCTCCCC 512 28 100.0 32 ............................ AGTGGTAGGCGCTGAACTGGCCGGGCTCGACT 452 28 100.0 32 ............................ AATACGTCGCACTGGGCAACTGCGCGAACGAT 392 28 100.0 32 ............................ GCAAGGTCGTAGCGCTGCAGGGCGGCGGGGTT 332 28 100.0 32 ............................ CGGCGTCGGCGCGGGCGTGGCGGTGTCACCGC 272 28 100.0 32 ............................ TGTCGCCAGGAACGCAACATTCCAAGGAATTA 212 28 100.0 33 ............................ ATTCGCCGCTACGTCGGCGGTGACCTGCTCAAC 151 28 100.0 32 ............................ AACCCCGAGCATCGCCGCGCCGAGCTGATGCT 91 28 100.0 33 ............................ CAAAAGCGTGCTTTAGGTATTCTGTGGCGAGGT 30 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : TCGGCGCGGGCGTGGCGGTGTCACCG # Right flank : ATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //