Array 1 1950311-1945815 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912266.1 Frankia saprophytica strain CN3 FrCN3DRAFT_FCB.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 1950310 28 92.9 33 A...............T........... GAGACCACGACCGACAACGAGACCGCCCTCGCG 1950249 28 92.9 33 .........T......T........... CACGGCGCGCCGCTCGTCACCCGGATCCAGCCT 1950188 28 92.9 33 ..............T.C........... AGACTTCGTCGCGACGGAGTCCAGGACGACTGA 1950127 28 89.3 33 ........T.....T.T........... ACCAAGACGATCACCGTCACCGGCGACACGACG 1950066 28 89.3 33 ....C....T......T........... CGTCGGTGGGTGCGGATCGACACTGGTCAGCGG 1950005 28 92.9 33 ..............T.T........... CTAAACGAATGGGGTGCCCAGGGTTGGGACGTG 1949944 28 96.4 33 ................T........... CCCTTGGGGTCGAGCTGGGCGTTCTGGTCGTCG 1949883 28 92.9 48 .........T......T........... CGGCGACCGGCGCCGGATCGGCTCGGCTCGGCTCGGCTCGGCCATGGT 1949807 28 92.9 33 .A..............T........... CGCGACGTCGAATGGCTGGACCCGATGCCCGAG 1949746 28 100.0 33 ............................ CGCGGCCCCGCTCACAGTGATCACGTGACGCGG 1949685 28 100.0 33 ............................ CTGCAGCGCGGTCAGCAGCGTCGCGCCGACCGT 1949624 28 100.0 33 ............................ GTGTACCACCTGGTGCCGGGCAAGATCACGCGG 1949563 28 100.0 33 ............................ TGCCTTGACCTCGTCCGCGCTCAGCCCGATCGA 1949502 28 100.0 33 ............................ ATCTTCGGGAGCATCGTGCTGCCGAGGTTCTCC 1949441 28 100.0 33 ............................ TCCGGCGCCGGCGTGCGCACGCCGTAGACGTGG 1949380 28 100.0 33 ............................ GTGATCGGTGCGCGATGAAGCATCTCCGATCGC 1949319 28 100.0 33 ............................ CTCGACTACGGCGGCAATCGGATCCTGGAGGTG 1949258 28 100.0 33 ............................ GTCATCAAGAGCAACGTGCTGTTCCGCCAGTAC 1949197 28 100.0 33 ............................ GTTGTAGACACCGCCGGTGGTGAGTTCAAGCCG 1949136 28 100.0 33 ............................ ACGAGACCAGATGGCGTTAAGTTCCCGGTCAAG 1949075 28 100.0 33 ............................ TGGTAGAAGGTCACCGGCGTCGACTGCCGCAGG 1949014 28 100.0 33 ............................ CGCCACACGTCCCGAAGTCGGGTGACCAGGGTG 1948953 28 100.0 33 ............................ TTGGCGGGAACTCCGAGGGAGGCTCCGCTGTAG 1948892 28 100.0 33 ............................ CGGGTTGGGATCGCCCCAGGGGCCGGCTCGGAG 1948831 28 100.0 33 ............................ CCCTCGACGTCGCGGAGCAGGTAACCGGCACGG 1948770 28 100.0 33 ............................ TCCGGAGTCGCGGATGGCGGCCAGGTCCCGGGG 1948709 28 100.0 33 ............................ GCCGGGTTCGGCTCATCCCGTTCGACCACGTGG 1948648 28 100.0 33 ............................ CTCGGCCCGCCTTCCCGCACTTCCGGCAGGTGA 1948587 28 100.0 33 ............................ CGTACGTCAGCCGGACGCGCGTGGGGTCCGCGA 1948526 28 100.0 33 ............................ GTCTTGCGTTCTTTACGTCGCATCGCAGCGTAG 1948465 28 100.0 33 ............................ CCGACACCGCCGCCCCACGCCATGTAGGTGCCG 1948404 28 100.0 33 ............................ TGACCGGCGAACTGGGCACCCACCCCGAGCGCG 1948343 28 100.0 33 ............................ ATGTGCTGCCGCTGCCGCTCCGCCTCGATGAGG 1948282 28 100.0 33 ............................ TGAAGCAAAAAGAGATCAAGGCGCGCGCCCTGC 1948221 28 100.0 33 ............................ ACGCCACTGTGGCCGATCCAGCGGCACCACGGC 1948160 28 100.0 33 ............................ TCCAGGAGCCCGCCGGCCACCAGGCGGCCCATC 1948099 28 100.0 33 ............................ TGCCTGCACAGCTCCCTGCTGCGGCATCGTGCC 1948038 28 100.0 33 ............................ GAACAGTGCCGCCGGGGCGGGCGTGAACGCCTG 1947977 28 100.0 33 ............................ CATTCTGAGATGCCGCCCGAGATGCTGGAAACG 1947916 28 100.0 33 ............................ TGAACCTGGGTCGCCAGGGAGTGCCGGGCGACG 1947855 28 100.0 33 ............................ CCCTGGACCTCAGGGAACAGGTCGTTGACGTGC 1947794 28 100.0 33 ............................ GGCCTCGATTTGGGCCGCTACTCGGGCGGCTGA 1947733 28 100.0 33 ............................ TCTGCGACCTGGTGGTACGGCCCGAACACCGGA 1947672 28 100.0 33 ............................ GAGAAGTAGCCGCGGAACCTGGTGACCGGGAAG 1947611 28 100.0 33 ............................ CTGTTCGGCAAGATCTCGACGCGCGAGTTCCAC 1947550 28 96.4 33 ..................T......... GCCGCCCCATCGGAGGGCGAGCCGGTCGAACGC 1947489 28 100.0 32 ............................ TCTCCGAGGGCGGCATAGGAAGCCCGGCGGTG 1947429 28 100.0 33 ............................ CGACGCGGCCGACAAGATCCAGCCGCAGATGCT 1947368 28 100.0 33 ............................ AGCGGGCCAAGGCCAAAGGCCAGATCCGCCAAG 1947307 28 100.0 33 ............................ ACCGCGTGCATGACCCCGCACGACCGCGAGTTT 1947246 28 100.0 33 ............................ CGTGCCACCGAAACCGATCGCGGCGATCGCGAG 1947185 28 100.0 33 ............................ CAGGTCGATCAGGTCGGCGAGGATGCCGGGCGG 1947124 28 100.0 33 ............................ CGCTGGCCCGGCGACGGCACGCCGACCAGCCGC 1947063 28 100.0 33 ............................ GTCCGGGGCTGCGCTCCAACTGGCCTGGTCGGG 1947002 28 100.0 33 ............................ GCCTCGTCGCACAGCACCGTCTTGACGTGCAGG 1946941 28 100.0 33 ............................ GCTCGCGACCCGCGTAGGGGCGGTACAAACGTG 1946880 28 100.0 33 ............................ GCCAGCCAGGGTATCGGTCCGATTCAACAGGAC 1946819 28 100.0 33 ............................ GACAATCACTGGGGGTAGCTATTCGATCACGTG 1946758 28 100.0 33 ............................ ACACGACGACCCAAGGACCGAGAGTCCTCGGTC 1946697 28 100.0 33 ............................ GCGGCCTTCGTCGCCGCGGCGACGCCGTTCACG 1946636 28 100.0 33 ............................ ATCAGGCTGTGGCTGCGCCCCGACGTGGAGGCG 1946575 28 100.0 33 ............................ CATGCCGGCCCGGCCTTGCCGTCGGAGGACTGC 1946514 28 100.0 34 ............................ CCGCCGAACGACGTCAGCCCGGAGATCCCCTGGG 1946452 28 100.0 33 ............................ GGGGCGGGCGGCGGGCTCTCCGGCCCCTCGCCC 1946391 28 100.0 33 ............................ TCCTCGAGGATCGGGTGCGGCTCGGTGGTGAGC 1946330 28 100.0 33 ............................ GTTCTTCGTCTCCATCCACGTCCGGAACTGCTC 1946269 28 100.0 33 ............................ ATCCGCAGCTTGAACATCGCGGTGCCGCTCTTG 1946208 28 100.0 33 ............................ CTCGTCGTCCAGGGTAACGAGGACGCCGGCGGC 1946147 28 100.0 33 ............................ AGCCCGGCGACCAGCGCCGCGACCAGGCGCGGG 1946086 28 100.0 33 ............................ CGGGTTCTCGTAGGTGACGAAGGTGACGCCGAC 1946025 28 100.0 33 ............................ GCGCATCTCGGCGAGATGACGCCACGGCGGCGG 1945964 28 100.0 33 ............................ ATCAGAGAACTCTGCATCGGGTTCTGGTGCAGG 1945903 28 100.0 33 ............................ ACCTGATCAAGTGGGCGGGATCCGAGGATGGTC 1945842 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================ ================== 74 28 99.0 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : TTCTTCGCCGAGGAAGACCACCCGGCGGTCCCGAACCGGCTCCAGACGATCGAAGCGCCCGCCTTGGTGTGATGCCAACGCGCCGAGTCATTCCGGCTCAACGGCCCCCAGGTGAGACCCGCCTGCTGAACCTGCGCGGCGAGCCGCTCGTCTTTCGACTGAAACGCCGGCGATGCCTTCCCCACGTCATGCAGCCCGCACAGCAAAGCGAACAACGAGCGGCCCCGCCCGTCGCTGGCACCGTCAAGATGCTCCTTGACAGCCGGAGCAAGGAACCGGTCCCAGATGAGCTCACCGACCGCAGCAGTGTCGAACAGATGCCCCAGCAGAAGGTGCGGCGACCCCTGCGCGTCCGACTTTCCCCACACCACGCCCAAGGCTGACTCGAGCATCACGTCCCCCGTATCGACGTTGTCGCACACATCAAACCATCAACGGCGCACAACCCTGGCAGTGGGCGTCCTGATAGGTCCACGCCGGGGCGAGGGGTAAGACTCTGG # Right flank : ACTTGATTACCTGGGAGTTTAGCGGGCGATAAGGGTGAAATACATCGGTCCGTCTCGGACGAGGGTCGAGACCGATGTCCTCCGACCTTGCGGTGCGCGACTGCACGAGACCACGCCAAGCCCTCGTGGCCTTCGCCCTTCCAGCCCGCTTCCTGCCGATGTCATCCGGAACAACCGCGCGATGCGTCCGCTGCCACGCTCCGCTCGTCGTCAACGCACAGGAACATCAGCAACCCGTCGTGCCGCAGCCCAGAATGTCACCTCTGTCGAGGACCGATATCGGTACAGGTCGGCTGCAGGCTCCCAGTCGCCGAGCTGGGGCAGGACGATGGCGACGCTGTACGCCGGGGCCTCGGCGCCGGTGCGGCGACCGGAGCTGAGAGAGGGCATCGCAGCGCTACCTCACACAACCAGCGCCAACTACAGTCCGTCAGGACATGCTGTGACAGACGGTCACGACCCCATGTGACAGAGAGTGAAGAAATCCGGGCCCATCTCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 2 1960429-1966434 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912266.1 Frankia saprophytica strain CN3 FrCN3DRAFT_FCB.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1960429 29 96.6 32 ............................G GATCTTCGTCACGTCGTATGTGAACGCAAACG 1960490 29 100.0 32 ............................. GCCGTCGTGATGAGGCTGCCCAGCAACATCGG 1960551 29 100.0 32 ............................. CCCGACTTCTTCACGATGACCGCCGACGCGGA 1960612 29 100.0 32 ............................. GCAGCGCTGATGGCGTTACGCAGCGCAGTCAG 1960673 29 100.0 32 ............................. CACAGCGGGCGGTCGACCACCGTGCCGGTGAT 1960734 29 100.0 32 ............................. CCGTCCGCGCGCCGGCCGGCCACGGCCACGGC 1960795 29 96.6 32 ............................G ATCGACACCTGCGAGCAGCGCCTGCCCGTCCA 1960856 29 96.6 32 ............................G CCGGAACTCACAGTGAAGGTCATCCTGGCGGA 1960917 29 96.6 32 ............................G TAGTCCGGGTGCCGCTTAGACCGGCGCCATTC 1960978 29 96.6 32 ............................G TGCAACAGATCACCTACCGGCTTGCGGACGAG 1961039 29 96.6 32 ............................G TCTCTGGTAATCGGACGCAATCGAGCGGCTAG 1961100 29 100.0 32 ............................. GTTGCGCTGAAAAACGCCCGGTCGTGCGGGGT 1961161 29 100.0 32 ............................. GGATATCCAGCCGGACGGGCGACCCCGAAAGC 1961222 29 96.6 32 ............................T TCTCGCGTCCGGTCCCAATCGACCAGGCAAAG 1961283 29 100.0 32 ............................. GGCGAGGCCGGGCGCGCGGCGTGTCCCGCGCG 1961344 29 96.6 32 ............................G ATCCTGTTCACGCGGGTGCCGGTCCGGGCTGG 1961405 29 100.0 32 ............................. TCTCCGATATCCAGCGGCAGCGGAGTGAAGTA 1961466 29 96.6 32 ............................T GCCGTTGCTACTGTTGCGGTGACCGAGGACTA 1961527 29 96.6 32 ............................T CCGAACCCGACCAGGACCTTGATAACGCGGAT 1961588 29 96.6 32 ............................G TTGCGCGCCGCAGCGCTGGCCAGCGGTATGAC 1961649 29 96.6 31 ............................T TCATCTGGCCTGGCCCGGCCGGCAACCTGCT 1961709 29 100.0 32 ............................. CCCTTGCGCGCCGCGATGCTCTCCGCGAACGA 1961770 29 96.6 32 ............................G CCCAGCGCATCGCCCTCGAGGCCGCCCGGGGA 1961831 29 96.6 32 ............................A CCCACCTCACCGTTCATGAAGGTATCCGGCAG 1961892 29 96.6 32 ............................G TGGTGATCGCTCCGGCGTCGCGGCGGGGGCCG 1961953 29 96.6 32 ............................G GGATCGGCATGTCAGGTCACCCCGTTCACGCG 1962014 29 96.6 32 ............................G TCGCCGACGCCCTCGGCGTCCCGCTCGGCGAC 1962075 29 100.0 32 ............................. GAGCCCATCACTGACTCGACGTCGTAGCGGCA 1962136 29 100.0 32 ............................. GGATCGCTTCCCACATCGCGACGTGGGACCCG 1962197 29 96.6 32 ............................G CTCGTCGCAGGCGTTGCATTGGCCCAGGTGGG 1962258 29 96.6 32 ............................G ATGTGGACCTCACCGGGGTCGACGGCGCGGCG 1962319 29 100.0 32 ............................. CCGACTATCGACGGGTCGGAACGGGCGCGCAC 1962380 29 96.6 32 ............................T TCGCGGGTACGGTCCCACGTGACCAGGCAGAG 1962441 29 96.6 32 ............................G ACGGGCGAGCCCCTGCCGGCGGTCGTGCTGTG 1962502 29 96.6 32 ............................G TAGCCGACGTTCGGATAGATCGACGTGAAGAA 1962563 29 100.0 32 ............................. GAGTTCGACATCGTCACCACGCCGATGTCGAC 1962624 29 96.6 32 ............................T CCCAGCGCGCCCGCCCCACCAACCCCACCTAT 1962685 29 100.0 32 ............................. GTCAGCACCGGCGGCGGCGCCGGATCGGGCAC 1962746 29 96.6 32 ............................G GGCACCGCCGGCTACATGGTGATCTCGCCATA 1962807 29 100.0 32 ............................. CACGTCTACGGCACGCGCACGACGGCGCCGGA 1962868 29 100.0 32 ............................. GCCGTGACGTACTCGGCCGTCGTGCGGTCGGG 1962929 29 100.0 32 ............................. GGCGACGGCGACGTGCGGCAGGCGCGGACGGA 1962990 29 100.0 32 ............................. CGACTGGCGGGAGGTCCAGCTCCCGTGGTGGA 1963051 29 100.0 32 ............................. GGCGACGGCGACGTGCGGCAGGCGCGGACGGA 1963112 29 100.0 32 ............................. CGACTGGCGGGAGGTCCAGCTCCCGTGGTGGA 1963173 29 100.0 32 ............................. GGACCCGCGCCGCCGCCGAGGTGGCCGCCATG 1963234 29 100.0 32 ............................. GACGGGATATCCGGCCTCTGCGCGATGATGAC 1963295 29 96.6 32 ............................G TCGATCTTGGGACGATCCGCGTCAGCGATCCG 1963356 29 100.0 32 ............................. CACGCGGGCCCTGGCGGCAGGGCTCGCAGGAT 1963417 29 100.0 32 ............................. GGGCGCGCGACGCGATGGACCGCGCCGCGCAG 1963478 29 100.0 32 ............................. TCCATCGAATTCATTCTTACCTAGGTGTCAGG 1963539 29 100.0 32 ............................. GCGAAACAGACGATCCGGCATTCGGTCGCCGC 1963600 29 100.0 32 ............................. ATCGCGAGCGGGCTAAACGTGGCGATGCCGTT 1963661 29 96.6 32 ............................G GTCGACCGCCGGTACCGACTGCGGGAGCGGAT 1963722 29 96.6 32 ............................G ACCAACACGGCGAGGGTCGAAACCCAGAAGGG 1963783 29 100.0 32 ............................. ACGGTCGATGACGGCGACGGCTGGGGCGAGGC 1963844 29 100.0 32 ............................. ACGGTCGATGACGGCGACGGCTGGGGCGAGGC 1963905 29 100.0 32 ............................. ACGGTCGATGACGGCGACGGCTGGGGCGAGGC 1963966 29 96.6 32 ............................G TCCTCCGGGTCTATCTCCCTGCCGCTGGCCCT 1964027 29 100.0 32 ............................. CCGAACGGCACCCGACCGGAGCGCCGGACTCA 1964088 29 96.6 32 ............................T GACAGCACGGGCGCGACTCCCCCGACCGGATC 1964149 29 96.6 32 ............................T TGGACACGGTCACCGCCGAGCATGTCGAGCGC 1964210 29 96.6 32 ............................G CGGTACGTGCCCACGCGTCGGGACGGCCGGGG 1964271 29 96.6 32 ............................G TCGTTCCCACCCAGCGTGTAGATCAGCAGATG 1964332 29 100.0 32 ............................. TCGCCGGAGTCGACGACGGCCACCGAGACGCA 1964393 29 100.0 32 ............................. GACTTCCAGCCGGTCTCGCCACGGTCGTCAAC 1964454 29 96.6 32 ............................G CGGCACGCCACGCGTCTTGGCGAGTCTGTCTT 1964515 29 93.1 32 .....................C......G GCCAGCGCGGCGCGCTGCACGGCGAGAGCCTG 1964576 29 100.0 32 ............................. GACGATGCGGCGCACGCCGCGGACGTAGAGAC 1964637 29 96.6 32 ............................G TGCCACACCGTCGTCCACAGGCTGTGGATGCT 1964698 29 100.0 32 ............................. GCCGTACCGCACCGCGAGGGGCGCACCACGAT 1964759 29 100.0 32 ............................. GTGGCCGGGTCGATCATGCCGGCTTCCCATAG 1964820 29 100.0 32 ............................. ATCTGGGCCGCGGCGCAGGCGGTGGCGACGGC 1964881 29 100.0 32 ............................. TGATCGTGCTCGCGATCGTCGCGCTGGCTGTC 1964942 29 96.6 32 ............................G TTCAGCGCGGCGCCGAACGCGGCGAACACGGC 1965003 29 100.0 32 ............................. AGCGACAGCGCGAGCTGGTGAGCGCCGATCAC 1965064 29 96.6 32 ............................T CCCCTACGGGGTAACGGAAAACGCCCCCACAC 1965125 29 96.6 32 ............................G GTCGTCCACGCGCTGATCCTGGATACCGGCGC 1965186 29 96.6 32 ............................G TCGGTCAACCAGGTCGCAGCGGAGTTCCTGCA 1965247 29 96.6 32 ............................G CCGTCGGACCCGCGGGGCGATCGCGGGACGAA 1965308 29 100.0 32 ............................. TGCACGGCGCGGGCCCACGACGCGGGGTCGTT 1965369 29 96.6 32 ............................T GCTTGACGTCGTTGTGGTTGGTTCCGATCTGG 1965430 29 100.0 32 ............................. GGGATCGAGTGGCCCCCGGGTAGCTGGCCGAC 1965491 29 96.6 32 ............................G TCATCCGGGCCGCGCGGGCTGTCAAGCATCTC 1965552 29 96.6 32 ............................G AGCTCCTGCCTGCCGGCCGCGTCCCGGGTGAC 1965613 29 96.6 32 ............................G TAGGGCCGCCGCAGGGCCAGCTCCTGAACTGT 1965674 29 96.6 32 ............................G CGCGGCGGGACCGAAGACATCACGCTGGAGAT 1965735 29 96.6 32 ...........................T. TTCTTGACGGCGCCGAGGTGACTTGGTGAGCG 1965796 29 96.6 32 ............................A GCAGCGTGTAGTCGTAGCCACCGTCCTCCAGG 1965857 29 100.0 32 ............................. GAGTCCGCCGCTCCCGCGCCCTACCCGAACGG 1965918 29 100.0 32 ............................. CGAGCAGGTCGTCGTCCATCGGCTCCAGCTCG 1965979 29 100.0 32 ............................. CAGACCGAGATCTGGATCGGCTCGTACCAGGC 1966040 29 100.0 32 ............................. TCGCCCGGGGGCATCGTTGTCAGGTCGTCCTG 1966101 29 96.6 32 ...................C......... ACCGTCAGGGCCGGCGGCGCGGGCGGGCAGGT 1966162 29 93.1 32 .........................C..G GCCGCTGTGGACACCGCAGGGCTCATACGCGC 1966223 29 100.0 32 ............................. GCCTACGCGAAGACGCTCGGCGTCGTCCCCTA 1966284 29 100.0 32 ............................. CTCCCAGACCACTGGGTCGGGGAGGAATACCA 1966345 29 100.0 32 ............................. ACGGTCTACCTGCGGGCGTACGTCTACATCGC 1966406 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 99 29 98.2 32 GTCGTCCCCGCACGCGCGGGGATCTTCCC # Left flank : GCCCGCATCATCCGCGACATCAAGACCCTGCTCCTCGGCGACGAAGCCGACTTTCCAGACCAGGACTCGCTCCACCTCTGGGACGAGTTCGACGGCGCCGTAGCCGGCGGCGTCAACTGGGCAGCCGACCTCGCGGACCTCCCCGCCGAGAACACCATCGTCGGCGTCACCGGACCCGACCTCGACGAACAGCCACCACCCTGGTGACCGTCGTCGTCCTCATCGCCACTGCCCAAGGACTCCGCGGCCACCTCACCCGCTGGATGATCGAAGTCGCCGCCGGCGTCTTCGTCGGCAACCCCAGCGCTCGCGTCCGCGACCGCCTCTGGGCCCTCCTCGCCGACCGAGTAGGAGACGGCCAAGCCATCATGATCGAACCAGCGAACAACGAACAGAAATGGGCAGTCCGCACCGCCGGCCGCGACCGCGGCGAACCCATCGACTACGACGGACTAATACTGTTCGCCCGCCCCCGCCACTAAAACCCCAGCTCAGCAAGC # Right flank : CGGCGGCGGCTTCCAATTGCCGGCAAGTGGAAGGTCCACTCGGAAATGGAAGATCGTCAGGGGAACCTATGGCGGGCGCCGGAGGCGCATCACCGGACAGCAAGTCTGGTAACCTTAAGTGTTCATTTAGTGACAGTAAACGGGTCGTGTCTGAAGGTTAAGTCGCAATTGACAACGTGACGGGCCTGTAGTCGACACCTACGCCCAGCCCGGGTGGCATCGAGGGGGATGGGTGCCGGTATGGACTCGCGGCCGAGACCCGTCTCGCGGGGGCACGGTGCGGGTGGTGGGTGTTCGGGGGTGTCCGGGGCGGCTGAGGGCCGTGGCGGCCCCGTCGCGGGCGTGGGTAACGCCGGCCTCGGGGTCCTACCGATTGGGTGGCACGGTAGGCATCCGCCGGGTGTTGGCCGTCGGGGTGCGGGTGTGGAAGCGGGGCCGGGGCGCGGCCCGGTGTCGGGCCGCGCCCCGGTGGGTGCCTCATTGGCGGGTTGTCCCACCCC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGATCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //