Array 1 9616-12602 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFDY010000020.1 Acinetobacter baumannii strain 15998 scaffold20.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================= ================== 9616 29 96.6 30 ............................T TTAGGTGTCACAGTGCCAAAAACATTACAG 9676 29 96.6 29 ............................T GAAACAGATTCGGGAGCCGAAGCTCCCGA 9736 29 96.6 30 ............................T CTAGGGCTTTAAATAACTGAGCGTTTGCTT 9796 29 100.0 30 ............................. CGTTTGTTGAATGCAGACGTTTTAGACATG 9856 29 96.6 30 ............................G CCTGTTTGCTGTATTAGTTCTTCACGGACC 9916 29 96.6 30 ............................T CCAAGCAATTATTCGCTATTTCGACAATCA 9976 29 96.6 30 ............................T CAATTGGAACGATATCAGGCTAATAACTAC 10036 29 100.0 30 ............................. AGTAAACGTAATGAGCAGTTACAAGCTGCT 10096 29 100.0 30 ............................. ACAACGGGTGAACCTGTTACGCCAAAACCC 10156 29 96.6 28 ............................C TGATGCTCAGGATCCAAATGCACCTGAT 10216 29 96.6 29 ............................T TATGATGCTGTAGCGTCTCAAATCATGTC 10276 29 100.0 29 ............................. GTTACCACAAGTGATAACACAGCAAGACC 10336 29 100.0 30 ............................. ATTCGGATCTGATTAACTGGACTGTCGGTC 10396 29 100.0 31 ............................. TTCACCAGCCTCGGCTAGACTTGATGCTCCT 10456 29 96.6 30 ............................T TTAACCGAGATCAAGAAGTAATTGCTTGGG 10516 29 96.6 30 ............................T ACAATACGACGTGATAATGCAACTAAAGCC 10576 29 100.0 30 ............................. CGGTAAAATTAAGTTACCTGCTAAACTTGT 10636 29 100.0 30 ............................. ATCAAAGCCTTAATCGCTAAATCAACTGCT 10696 29 96.6 30 ............................T TTTGTTTATACGGTTAATAAATCAGTACAA 10756 29 100.0 31 ............................. TTACACAGGCATGGCAATGAAAGTGTTCTTT 10816 29 96.6 30 ............................C CTCGTGGAAAAACTTAAAAGCCATCTTCGT 10876 29 96.6 30 ............................T TCATCTAAATGTTTTTGACGTTCAGCTTCA 10936 29 96.6 30 ............................T AGACAGCTCATTTAATCCGGGTGAGAAACA 10996 29 100.0 29 ............................. GTTCAGCATTCCCCTTCGGGGTCAACGTC 11056 29 100.0 31 ............................. TTACCCCTCCTTACTTTCTGCTTTAACTTCT 11116 29 100.0 30 ............................. AAACACCAAGCCATAAAATTAATTACAGCA 11176 29 96.6 29 ............................T GTTTTGCTAATTTATCAATATCGATTTTC 11236 29 93.1 30 ...AC........................ CAGGGGTCAAGTTCAGAAGATTTACGTTAC 11296 29 82.8 30 ...GC.......CC..............G GTATTAGTGCGAATTGGCTTTTAGCCCACG 11356 29 89.7 30 ....C.......G...............T AAATGCTCAACTATTTCTGTAGCTAATGGA 11416 28 82.8 30 ...GC....T...-..............T TCAAATGATTTAATGAGCTTGTAGCCATTT 11475 29 89.7 30 ...GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATA 11535 29 82.8 31 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTTC 11595 29 82.8 30 ..CGC.......CC............... AGCCATTTACTTTGATAAAGCGTCACATAG 11655 29 96.6 30 ............................T AGGAAATTCTATCGGCCCAGCATCTACAAA 11715 29 100.0 30 ............................. AGAGACACATCGTTAATAATCTCTTGTGCG 11775 29 100.0 31 ............................. TGAGCAAATTATCAATTGATCTATCTGCAAG 11835 29 89.7 30 ............CC..............T AGACGGTGTTACCTGTAGGCGGTGTCTACT 11895 29 89.7 31 ...TC.......C................ TCGTTTGAATAATATGGACAATCCAGCCAAT 11955 29 86.2 30 ....G.......TC..............G CAGCATCAAACGAGATATTGGCTAACATAT 12015 29 79.3 30 ...G......A.CC...........C..C AAATAGTTTTAGCTATCTGAGCATTTAATT 12075 29 89.7 30 ....G.......C...............T TCATCACGTAGCCTTTTACACGCATCTTGC 12135 29 93.1 49 ....................C.......T GTACGCTGAGTATTGATATTGACATTCAGGGCATTCAGAATTTGGCGCT 12214 29 93.1 29 ....G........C............... CCAGTTTGCTGAAAATCACCAATACGGTC 12274 29 79.3 30 ...TC......TCC..............G ATTCTATGAGCGTGACCATGACTCTATTTA 12334 29 89.7 30 ...GC.......C................ TTATCCAGATAAAACCATATCTACAAAGTG 12394 29 93.1 30 ....G.......................G ATCATCTACAGTGATTGAATAAACGGTTTT 12454 29 82.8 30 ...GC......TG...............C AACGACGACGCCGTGTGTTTGTTATCGGAA 12514 29 79.3 31 ...GC....T..TC..............C AAGTAGGATTTGCAGCCCCAATAGTCTTTAT 12574 29 75.9 0 ....G....T...C.A........AT..T | ========== ====== ====== ====== ============================= ================================================= ================== 50 29 93.4 30 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCAAGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGTTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTTCGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-52] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //