Array 1 1038-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEJQ01000045.1 Pseudomonas aeruginosa strain Pae_CF67.12e CF67.12e_contig_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1037 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 977 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 917 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 857 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 797 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 737 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 677 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 617 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 557 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 497 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 437 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 377 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 316 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 256 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 196 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 136 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 76 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ATCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCGGTTCACTGCCGTATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 255-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEJQ01000139.1 Pseudomonas aeruginosa strain Pae_CF67.12e CF67.12e_contig_139, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 254 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 194 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 138 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 78 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 18 18 64.3 0 ..................---------- | ========== ====== ====== ====== ============================ ================================ ================== 5 28 92.9 31 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TATAGGCAGCTAAGAAATGTCCGGTCCCGGAAAAGACCAACGCGGGAG # Right flank : C # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38056-39404 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEJQ01000063.1 Pseudomonas aeruginosa strain Pae_CF67.12e CF67.12e_contig_63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38056 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 38116 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 38176 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 38236 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 38296 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 38356 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 38416 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 38476 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 38536 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 38596 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 38656 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 38716 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 38776 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 38836 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 38896 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 38956 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 39016 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 39076 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 39136 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 39196 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 39256 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 39316 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 39377 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48547-48279 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEJQ01000063.1 Pseudomonas aeruginosa strain Pae_CF67.12e CF67.12e_contig_63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48546 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 48486 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 48426 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 48366 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 48306 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 94.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ATAGGCAGCTAAGAAAAGCCACTCGCGGGCCAGCTCGGGCGATAGCA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //