Array 1 3290-2287 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFGB01000111.1 Pelotomaculum sp. FP Psfp_contig000111, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 3289 31 100.0 34 ............................... CCTGCATTGCCGTAGAAATATAAACGATATTCGG 3224 31 100.0 35 ............................... AATCAGAACTGGACTTAGACGCGGCGAGCTTTTAG 3158 31 100.0 34 ............................... AAGTTGATAAATACATGCAAGATAAAGAAAACAG 3093 31 100.0 32 ............................... ACGCAGGCTTACACTATTAAGGACAACCCAAG 3030 31 100.0 33 ............................... TGATAATCTACCCAGACGGAAGGAAGGTTGTCG 2966 31 100.0 33 ............................... AGTAAAAATATTAATCAAGTGCTCAATGTTGAG 2902 31 100.0 34 ............................... TCTCGCATAGCCCTAACTGCTACAACAAAATGCG 2837 31 100.0 35 ............................... ATGCTTAACAATGCCGATGCGCTTAAAATAATCAG 2771 31 100.0 35 ............................... TTGAATATTAGGAAGTACCTATTTTTCATCCTGAG 2705 31 100.0 34 ............................... TCAGGGATACTATCTACAACATGTACACCATCAG 2640 31 100.0 34 ............................... TCGATCAGGCGGTTATTACGCCTAGAACAACCCG 2575 31 100.0 33 ............................... AAACCGGTTGGCCCAACAGCGCCAAGGTCCTGG 2511 31 100.0 34 ............................... CCATAATCACATATCCATCAGGGACGAAAGGCTG 2446 31 100.0 33 ............................... TAATATCAACCATAAATCGGCAATAAAACCAAG 2382 31 100.0 35 ............................... CCCAATCTCCCGGTATATCTGGGCGTTGTCGAAGG 2316 30 93.5 0 ..-....................G....... | ========== ====== ====== ====== =============================== =================================== ================== 16 31 99.6 34 TCGCACCCCCTGCGGGTGCGTGGATTGAAAC # Left flank : AAATAATAACCTCCCCAAAGAAACTGCAAATATTTTAGCAGATTGGGGAGGGTTCTGAATCATCTTTTAGATAATCAATGTGCAAAAAAATCCTGCCTGCCAGGACTACTTTACGAGCAAGATTACATTATACCAAGGAACCCAGCGGGACGC # Right flank : CACCCCGTCCCAGCCCATTCAATCTTACATTAATCACAAGATTACACACTTTCACACACAACCAGTAACAGTGGGGTTTATATTCCCATCCAAATAAACTGCCTGTCTATGCCTCCCCCCCGGACTACCAAAATCCAGCTATGTCGGGACTGGGGCCACAGCAACCGGTAGCATTCCCAGCCCACAGCCACAAACCAGATTACCCTTCCCTGCGATGTTGATAGTTATCTACCAGTAGCCCACCCATAACCCTGCCTATACCAGATTACTCAGCAAGGCAATTCTACGAAAAAGCGAACCACCAATGTTGGCAGCTTACAGGCAACGAAAGCTGTTCCCTGGCGATAAGCAACCCGCCAACTTACCCGGTCCCTGATTGTGGTCTTATAGTTAACCGGCAGCTTTTTTCACTGATGAAACTCCGCTTTCCAGAATGCCCTGCAAAGCTAGTGTAAATTATCCCCTGGTATGATTTTCCTTGCCCGGTCCATTATCGCTTG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCCTGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4149-3212 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFGB01000038.1 Pelotomaculum sp. FP Psfp_contig000038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 4148 37 100.0 38 ..................................... CCGCGGCACGTGCCGCCAGATAATTTTGTTTTTCTGCC 4073 37 100.0 38 ..................................... TCGCCGCATCGGCCTCCATGGAAGCAATAGCAAGGCTA 3998 37 100.0 40 ..................................... ACGATGATGTGGATAATGGTTCTTCTCCGGTGGTTAGAAG 3921 37 100.0 35 ..................................... ATCACAGGAGATAAGAAGATGCCTAAGATGCTCAA 3849 37 100.0 40 ..................................... GGTGCTGTAAATGCGGGTAGGAGATAAGCCTGACCTGTCC 3772 37 100.0 37 ..................................... CTAGAACCGGTTAGTTTATGTATGCTGCGTTTCTTGC 3698 37 100.0 42 ..................................... GTACCTGTACCAGGACTTGTTCAAGAAGCAAAGGAAGGTAAA 3619 37 89.2 37 .................A.....T.A....G...... GAGGTGTCGAGGCTTCGGCAGATTGTGAGCCAGGCCG 3545 37 89.2 38 .................A.....T.A....G...... GATTGGACGATAGCACGGTAAAGAAGGCCTGCCAGCAG 3470 37 89.2 38 .................A.....T.A....G...... TGGGATATTTTGGAGGCGATACCGTGAAAGGTGATATG 3395 37 89.2 37 .................A.....T.A....G...... GCTGAGGCGATTGCGGAGTATAATAAGCTGCTCGATG 3321 37 89.2 36 .................A.....T.A....G...... GGCGACGGCGATCCGGAAACAGCGGAAATATGGAAC 3248 37 89.2 0 .................A.....T.A....G...... | ========== ====== ====== ====== ===================================== ========================================== ================== 13 37 95.0 38 CTTTCAGTCCCCTTGTTTTCGGGATCAGCACTGCAAC # Left flank : AATAGACGAAGCATGAATGGTTGCGAATACATCTCTATATCCGGATATTTCGGCTTCACTTCTATTCCTGGGGGTTGTTTTCTGGATCATAATCTCTTTCAATTTCTGATTTGAAACTTTTATTCCTTCGATCCTGTTAGAGGATTCGGTACTTTGTATTTCAGCAATTTCCTGTAGAGTCTTTAAAATTTCTGGCGATTGTCTGTAAAATAAATCCTGTTTACCCTTGTACTCATTTATTCTCGCTATCGCTCTGACAATATTTATAGGAATATTGTCCAGTCTTTTTAATGACTTCAGGCTAATCAGCCCCCATAGAAATATGATCAATTAATATAATCATATTACTGTAAATATTATCATAAGTAAAGGTCATGATAATATTTTTCCATTTAATGGGAGGTAAATAAACGGTTCAAATATAGAATAGGAAAACCCTAACCCAAATCTGGCTGTTGTCCACCTGCTCGCGCTATTGTGCCAAGTAGTGTTCACTCAAT # Right flank : CCGACCGCAAACGATCGATAAAACCCTTGGTATTACTGGCTTTAGCAGCAACCAAGTGAGTGCTGAAACCTCTATTTTTTCGCAAATCTTTTTTCTGCGTCAAAAACCCCTCTATCTGCGAAACTGAGATTTTATTCATCATTTCCCGCTCCTAGCTAACAATCCTCTTTTTATTTTAACCACGACACTGCAGAATATATGGGCAATTATCGTTACATTTACCCAGGCCAGGATCAAGTTCCTCATAAATCATCCGCATTTTTTGATCGCGTTCCTCGATAAACCACTGGCGGAGCTCATCGTCAATAATATGGATATCCTTTTTCACGATTAGGCGATCTCCCTTGAATTCGGCATAAACAATACAGCCCAGGTTTATCGGAAATTCATGAATTGCTTCCATCACCAGCGCATAGCCGGTGGTGGACAGCCGGTGAAATTTTTTTGGTTCACCGAATTTAAGATCGAGTACCATCGGCTCGGAAAACGTGAAGGCGTCA # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGTCCCCTTGTTTTCGGGATCAGCACTGCAAC # Alternate repeat : CTTTCAGTCCCCTTGTTATCGGGTTAAGCAGTGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.10,-5.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 31033-33158 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFGB01000048.1 Pelotomaculum sp. FP Psfp_contig000048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 31033 36 100.0 42 .................................... TGTCTTTGGCGGGTTCGCCGTCCAATTCGATAACCCTGAAAA 31111 36 100.0 35 .................................... CCCCCCTCTAATCAACGTACAAACCTGCTAATTCC 31182 36 100.0 35 .................................... TTCCAGTTTGCCGTTTTCGGTTTCCTTTGCAATGA 31253 36 100.0 35 .................................... GCGGTTTCTGGTTTTATCTCTTCGGGTGTGAATAT 31324 36 100.0 36 .................................... TGAGTACATCCTCTTGAAGCATTTAGCCGAATACGA 31396 36 100.0 36 .................................... TCCTTATCAACCCGCTTTGAGAAACCAATATCAAAG 31468 36 100.0 40 .................................... GCGTCCCCAGGTCGTTATATTTGCTGATCAAGCCTAACAC 31544 36 100.0 37 .................................... ACCGTCATCCAAATGAAGCTTAACTCGGCTTTGGCAG 31617 36 100.0 36 .................................... TGACCGTGCGTACCCATTTCTTTGTCTTGGGGTTCC 31689 36 100.0 35 .................................... GCCCCAGCCAGCTTCGATGCCCCCGCCAGCTTTGA 31760 36 100.0 36 .................................... TTGCTGGTTAGGGGAGGTGATACAAATAGCCCGTAA 31832 36 100.0 34 .................................... TCCTTATCAACCCGCTTTGAGAAACCAATATCAA 31902 36 100.0 34 .................................... TCCCGTCCGTTTGGATTGCTACAATAGTTTTATT 31972 36 100.0 37 .................................... TTTTTCATAGTTCTGATACTCATCAACACTGGGTTTA 32045 36 100.0 37 .................................... TTAGTCCTCCGTTTTTGTCAAAGTAATTTTTCATCAT 32118 36 100.0 37 .................................... GTAATCCGCAGGGTGCGCATCGAATAAGCCCCTTTGA 32191 36 100.0 30 .................................... CAAAAAACCTTTCGTAAAAATCCCGTCTGT 32257 36 100.0 36 .................................... GCTTTACGGCTGACGGTAACGCCTGTCAAGTTAATA 32329 36 100.0 42 .................................... ATGTTTGGTGTCAAAACGTAGGTAATATTTGCGCTTTGGTAG 32407 36 100.0 39 .................................... TGCTGTACGGGTTTTGATTTCAACCATATCAGCATGCGA 32482 36 100.0 37 .................................... TCGATTCTGTGATTCAAGGTATCAAGCCGCTGATTAC 32555 36 97.2 38 .......................G............ TCGTCGTCCTTGAGGTCGGCAATAATTTCATCTTTTGC 32629 36 100.0 35 .................................... TTGTGCGACACGCTCCTCTAACGTCATCTTTTTCA 32700 36 100.0 41 .................................... TTCATTCTTTTCGATAACGAGATAGTCCGTGCTTGCATCAA 32777 36 100.0 34 .................................... AGTACATTTGCTTGATCTCGCTGACAGGGACAAG 32847 36 100.0 32 .................................... GTTTCTCTGCCCACGCCTGGGCTTCCTCTGCC 32915 36 100.0 34 .................................... CCTTCCATTAATTTTTCAATGTCAACCTTTAAGG 32985 36 100.0 32 .................................... GACGCTTACTATATCACCCTCTACTGCGTAAA 33053 36 100.0 32 .................................... TTTACCAGAAGCCCATTCGGACTGGTATATGA 33121 36 88.9 0 .........................CCC.......A | G,T [33150,33154] ========== ====== ====== ====== ==================================== ========================================== ================== 30 36 99.5 36 ATCAAAAACAAAAGACCCCGTTAAGGGGACGGAAAC # Left flank : ATTATTAACAGCATTAATAAGCGCTACAGCGCTTATGTGCATGATGTGTCTCTGGATGATCCTCAAGCCATGGAGCAAATAGCACGCCATACACGAATAGTCCGTTACTCCTTGAATTCGATTGTTTATTATCTGGAAAACACCAAAATTAGCGGATATATGGGGCGAATAACGTTGGTTGTCAGTGGACCTGAGCAACTCGCCCGACTGGCGGGAGCCTTGCTCACCTTTGCCGAGTATTGCGGACTTGGTGTAAAAACAGCATTAGGAATGGGAGCCGTAAGAATTAAGCAAATAGTTTAGTGATATTATTGGGAATTACGGTGAAACTCTCAATTGAGCGCCGCAATAAGCAAAATGGAGCAATATTAAGCAAGTAAAAGAAAAAATGATATGATTTTTTACGGATGGCCGAGAGTATGGAAATTAAAGTCAAATATATCTTTTGCTCCGCAAACTATATTTTGAGAGCAGGTCCAATGAGGTTTGGCAAAGACAGT # Right flank : TGTCAAGCCCACTTTAAAAAAGAATTGGAAAAAATATTTCATTATGCGAGACAAAAGAATATAACAAACTAAGCCCAGAAAATTACAATATCTGGGTCTGAGAGGGTGGTCC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCAAAAACAAAAGACCCCGTTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 8749-140 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFGB01000092.1 Pelotomaculum sp. FP Psfp_contig000092, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8748 31 100.0 33 ............................... AACAACACCTATTATCACCACTCTTTGGCTGAG 8684 31 100.0 35 ............................... TGATTTATGCGGATCCACCTTATTTGTTATCAACG 8618 31 100.0 33 ............................... CCGGTGGGCGAAGGGGAACAGCCGCCTGGTTAG 8554 31 100.0 35 ............................... AGGCCGGTATCGCCGCTTACAAAGTAGGCAGTGAG 8488 31 100.0 37 ............................... AACGGTGTGGGAAGCAGTAAAAAACATTGTAGTCGGG 8420 31 100.0 34 ............................... GGCGTTAATCAGGCGGGTGTTGGCAGCCTCAAGG 8355 31 100.0 34 ............................... ATGGTTACGGTGATAACTTTTGCGTTGGTTTTTG 8290 31 100.0 34 ............................... CCCTACCCAATCAAGGTGGTTTGTGGAGTCCCCG 8225 31 100.0 35 ............................... ACTGACAACCTAAACCATCAGGGCCAGGTCAATGG 8159 31 100.0 34 ............................... TCGAAAGCCTGGTTGGATGCCCTGTATGTGTCCG 8094 31 100.0 33 ............................... AATGGGATGCGGTTGGTGCTACAGAAATAAACG 8030 31 100.0 34 ............................... CCGGTGGGCGAAGGGGAACAGCCGCCTGGTTATG 7965 31 100.0 35 ............................... TAAAGACACCCGCATTGATTTGTTGGCGATACTCG 7899 31 100.0 34 ............................... CAGAGGAGGGATACCATGCCTAATACCATCGAAG 7834 31 100.0 36 ............................... TAGCGAAAGCAAACTTATCTTTTAGGGGCGACCAAG 7767 31 100.0 34 ............................... ACCGGTTGGTTAGGTGAATCATTCGAGGCCGGCG 7702 31 100.0 34 ............................... CACCTGCCGCAAGCCTCATACGCCGACCCCGGCG 7637 31 100.0 35 ............................... ACGCTGAAAAGCGGCGATAAGCCCATTGAAGGGCG 7571 31 100.0 35 ............................... ATATAGACTGGAAAGACGGCCTGCCAGATGACCCG 7505 31 100.0 33 ............................... CGTTGAGGGTGCAAAGCTCTGGTTTAATTGCAG 7441 31 100.0 35 ............................... TTCGTGTTTGTCTTCAGGTATTTCAATATTTGAAG 7375 31 100.0 33 ............................... TAGGAGGTGAAACAATGAAAAAATTATCTGAAG 7311 31 100.0 35 ............................... CCTTGATCAATTAGCAGATCTTAACTCGGAAATGG 7245 31 100.0 34 ............................... TGTGAGTGATTACCATGCAACTATTGACCGTGCG 7180 31 100.0 36 ............................... CTTGTTAAAATACACTACAAAACAAATATAAAAGTG 7113 31 100.0 34 ............................... ATATATTTTGGTGCGCCTGGCAGGAATCGAACCG 7048 31 100.0 34 ............................... ACAGCTACAACCTTGTCAGCATCAGCCGCCTTGG 6983 31 100.0 35 ............................... CCGGCTTGCAACATCAAAGAACCCTTGATACCAAG 6917 31 100.0 35 ............................... TTCGTGATTAAGAGGACTATGATTATCGACCAAGG 6851 31 100.0 33 ............................... TTGGGGTTTGGTTGGTGAAACATTAGAACAGGG 6787 31 100.0 34 ............................... CCGACCAATGTCATTTTGGACCGAGAAAGATGTG 6722 31 100.0 35 ............................... GGCTTTGGGCCAAGGTTGAGATTTTTTAGTTGACG 6656 31 100.0 34 ............................... TTCAAATCGGTCTAATGGAAATTCCCACTTGTAG 6591 31 100.0 33 ............................... TGGTTGTTTTGGGTATTGCAATTTTATTAAAAG 6527 31 100.0 35 ............................... TAGCAAGTTGCAGAGGGTTAATGCTGTTATAAAGG 6461 31 100.0 34 ............................... GCATGAGCAGAGCCACCGGTCCCAACGTGAGCTG 6396 31 100.0 33 ............................... GGCTACGTTTTTTATTAGGCTTACCGTTACAGG 6332 31 100.0 34 ............................... TCCCACGCTGGACGACCTAAGAGACAGCGGCCAG 6267 31 100.0 33 ............................... ATCGCCGCCGCAATATCTTTTTTATTTGGTATG 6203 31 100.0 34 ............................... ATGAAACTGGAGGATGCCATGGCGCGCTATCACG 6138 31 100.0 34 ............................... TTACAATCAGAGCGCGCCGGATGATGGCGAGAAG 6073 31 100.0 33 ............................... AAACCGGCTTAATGTTGATTTTGAGGAACTGGG 6009 31 100.0 33 ............................... AAAAAACCCTGGAGAAAGTACTTGCTCCTTTGG 5945 31 100.0 36 ............................... ATTTTAAAATTAATCATTACAAATATAAAAATACCG 5878 31 100.0 33 ............................... TAGGAGGTGTTAAAATGAATATAAAATTTTACG 5814 31 100.0 34 ............................... TAAACCATATGTATTCTTTAAAAATTCCAACCAG 5749 31 100.0 33 ............................... TGGATACCATTCGTCACATGCTGTACATCTGCG 5685 31 100.0 34 ............................... TGGCTTCTTATTTATATTATGGCATTGAGCAACG 5620 31 100.0 34 ............................... ATTACCAAAGGCAAGTTTTATTCAAAAATATGGG 5555 31 100.0 34 ............................... CCGAAAGTAATGTACGGGATAGAGGGTAGACTAG 5490 31 100.0 33 ............................... AAAAAATGAAAAATATTATAATCATGGGTCGTG 5426 31 100.0 34 ............................... TAAATTTACTGAGGTTGAAAATCTTTTACTTAAG 5361 31 100.0 34 ............................... TTTTTCTCCATGTTCTTTAGCACAAGAGGCACAG 5296 31 100.0 35 ............................... CCCTTTAAAAATACCATTAAAAGGAGAATCCCAAG 5230 31 100.0 33 ............................... TGCATAAATCTTTTTGTTTTCAATTAAATTCCG 5166 31 100.0 34 ............................... CAATGATTGACAAAAATTTTAAAATACAACCAAG 5101 31 100.0 33 ............................... GTTTAACAGTGGTGAATGGACTCTACACGCTAG 5037 31 100.0 34 ............................... TTGGTGATACAATTGAAACAATTACCCGAACATG 4972 31 100.0 33 ............................... AAATATGATTGAAAATATCGATATTGGGTTAAG 4908 31 100.0 34 ............................... ATTGCTACAACTGCTAATGCCAATCCATTAATAG 4843 31 100.0 34 ............................... CATCATATTTTGTTACTATTCCACTTTGTGAGAG 4778 31 100.0 34 ............................... CCGTATCAACCCCTGCTCCACCGCCTCATACACG 4713 31 100.0 35 ............................... ACTAGAAAGTAGCTTAAGGCGACTTGATGGACTGG 4647 31 100.0 34 ............................... CACTCTTTTACGATATTAGCCTCAAGCTCATCGG 4582 31 100.0 35 ............................... CGTGGCGTTTAGATTAGGATCCTTAAGATACTCAG 4516 31 100.0 34 ............................... AGCCAGTACTTGTGCCGCCTGCTGGTGTATAGCG 4451 31 100.0 33 ............................... AATCACTTGCCATCGCTTTAGGCATCACCTAAG 4387 31 100.0 33 ............................... CCGGTGGGCGAAGGGGAACATCCGCCTGGCTAG 4323 31 100.0 33 ............................... GATGAAGTTGCCTTGATGCCGGAGTCCTTTGTG 4259 31 100.0 33 ............................... CGGGTGTAAGCACCACTGCCCCCCGGTAAGGCG 4195 31 100.0 33 ............................... TCTTATTCGCTGCCTTTACCGGGAAGCTGAGAG 4131 31 100.0 34 ............................... AAAAAAATGTTTATCAATCGTCCAGATACGCCCG 4066 31 100.0 34 ............................... ACCACCGCCCTCCGGTAGCGTTACCCTGGCCCCG 4001 31 100.0 37 ............................... TTTTGGCCGATGAGCTTGCGGACCTGGGCAGCTGACG 3933 31 100.0 36 ............................... ATATAGCGTATCGATTATTTCCTGGTGGAGTGATAG 3866 31 100.0 34 ............................... CGGGTGACGTACAAAGACGGCCAGCAGGAGATTG 3801 31 100.0 34 ............................... TTAGAGCCACCGGAAGAAGGCGAGGAAACTTGAG 3736 31 100.0 33 ............................... CTGCGTGGTCATATCATCCACCGTCCGTCCGTG 3672 31 100.0 35 ............................... TCGTTTCCAAGTGGTTTTTTTAGTCCCAGATTAGG 3606 31 100.0 34 ............................... TGCCGTGGCCGGCAATGTTACTGTTGGCACGGAG 3541 31 100.0 35 ............................... ACTGTTTAGCCCGCCCTCTACGCCTGCGGCCATCG 3475 31 100.0 33 ............................... ACGTACGACGTAGGTGCGGGAGTCAGGTACGCG 3411 31 100.0 34 ............................... TTTGAACAAGAACAGGGATACGACAAGGATGAAG 3346 31 100.0 34 ............................... CGATAGCTACGTTAGCAGTGCCGGTATTGACCGG 3281 31 100.0 33 ............................... TGATGACTGTAAAATATTGTCCATTATGTGAAG 3217 31 100.0 35 ............................... AAATGCCGTCTGTACCTCAGTTAATACGGCTCCAG 3151 31 100.0 34 ............................... CCGCAAATGAGAACATTCGCCATTTAGGGCAGGG 3086 31 100.0 36 ............................... AAAATTAAAAATACTGGGTCATATGAGCGTGCGCCG 3019 31 100.0 33 ............................... TCGCTATATGCCCATGATTAAAGCTGGATTTGG 2955 31 100.0 33 ............................... ATAACTCAAGCTATACTCATATCTAGCCCAAGG 2891 31 100.0 33 ............................... CATAACCATCACTGTCTTTAGCACCAACCCATG 2827 31 100.0 36 ............................... ATCGAATATCTCATCGTCGTAAACATCTACCCTACG 2760 31 100.0 33 ............................... CCGCTCTCCACAGTAATCCTCAAAACATCCGCG 2696 31 100.0 34 ............................... CTTTAAGCAAAGGGTCATTTTCGAGCACTACTAG 2631 31 100.0 34 ............................... CGTAAGTATCGGTCCTAAATCCCTGACGGTCCAG 2566 31 100.0 33 ............................... CACGCGACGAAGAAATAATCCAAGCACTAATCG 2502 31 100.0 34 ............................... AAGCGTGTTGGCTTAAGCATTGCCAAAGGTTTAG 2437 31 100.0 33 ............................... AAAGAGGCGTGTATGAACGCGCTTAATCTTGGG 2373 31 100.0 35 ............................... CAGTTACCGCCGACAAAGACCACGCAAACCGCACG 2307 31 100.0 33 ............................... TTATCAGCCCATTTATGGCCGCAATATTGGCAG 2243 31 100.0 34 ............................... CATCCTTCGTAAGGAGTAAGCAGTTTGAATAGGG 2178 31 100.0 33 ............................... AGCGTAATAGGTAGTAGGCGTGTGAGCGCTAAG 2114 31 100.0 34 ............................... CAGTTACCGCCGACAAAGACCACGCAAACCGCAG 2049 31 100.0 35 ............................... GCATGTCGGTCATGTGCCCGTTCAGCGAGTTATAG 1983 31 100.0 34 ............................... AGAGGTTGATTGAGGAGGCGCAAGCCAGTGCATG 1918 31 100.0 35 ............................... TTCCAAGCGCTGGGTACCGAAGCGATCATTGCTTG 1852 31 100.0 33 ............................... ATGATTAAATCACCTCTCGTTTGTTATCTTGTG 1788 31 100.0 36 ............................... TAAAGGTGGTGACAATTTGCTCACAAGCTTATCGTG 1721 31 100.0 33 ............................... AGACAGCACATAAAGCTGCTCCACGAGTATCTG 1657 31 100.0 33 ............................... TATGGCAACTTGCCCTAAGTGCGGCTGCACCAG 1593 31 100.0 33 ............................... TTGTGTGTTTACAGCCATAAATACTGCCCCAAG 1529 31 100.0 34 ............................... ACCACCTTGGTTTGAAACCAAACCAAATTATGTG 1464 31 100.0 34 ............................... CATCGGTGGTTACAAAGCTTTGCCCAAAGGCATG 1399 31 100.0 34 ............................... CATTTTGCCCAACGTGTGGCACTGACACAGAGTG 1334 31 100.0 33 ............................... GTTTACGACACTGCAAAATCACTCAAAGCACCG 1270 31 100.0 33 ............................... CGATGATGAAGCTGCACGGTTGGCTAAATTTTG 1206 31 100.0 34 ............................... CTCAAAGAGAAGCGCTGGCCGGCCATACCCAAAG 1141 31 100.0 33 ............................... ACCAACCTGCACTTAATTCACCACCTTGGTTTG 1077 31 100.0 33 ............................... GTCTGGAAATTGAACATTGACGCGGGGCATGGG 1013 31 100.0 34 ............................... TCCCGTTCGTGCTCTTCGGCAAGCCTCTTCTGGG 948 31 100.0 34 ............................... CACCATTAAACAAAAACACCACCTCTAAGGTGGG 883 31 100.0 34 ............................... CCAGAGATTACAAAAGAGGATGTCCAGGAAGCTG 818 31 100.0 34 ............................... TCCATGAGATTATGAACATGAAAGCTAATGGGCG 753 31 100.0 33 ............................... AAATGAGTAAGGAGATGTCGACGTGGACAAGCG 689 31 100.0 34 ............................... AGTGGTTTGTTGACCTGGCTGAGAAATACGATGG 624 31 100.0 33 ............................... GCCTCGGGTGTGTGTCGGGGATGCCGGAGCGCG 560 31 100.0 33 ............................... AGGCAGTAACCGTACTAACAGCACCAATGCGGG 496 31 100.0 35 ............................... TCGCCATGGTAGCTACAGTACCCGGCGGCGAGTTG 430 31 100.0 34 ............................... TCCATCAGGCGGTTATTACGCCTAGAACAACCCG 365 31 100.0 35 ............................... GCCAACTGGAGGCTGAGGCTAATGAGGCGGCCAGG 299 31 100.0 33 ............................... GTTGTTTTATACCAAGGAACCCAGCGGGACGCG 235 31 100.0 34 ............................... AGGTTGCCTAACAAGTATCACACCATCACCTCAG 170 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 133 31 100.0 34 TCGCACCCCCTGCGGGTGCGTGGATTGAAAC # Left flank : TATAGAAGATTACCCCCCGTTTTTCTGGAAATGAGGTGCTCTTAATGATGGTGCTCATTACTTATGATGTTAACGTAACTACTGCTTCAGGAAAGAAACGTTTACGTAATGTTGCAAAGCAATGCAAGAACTTCGGACAGAGGGTGCAAAATTCTGTATTCGAATGCCTGGTTGATCCAACACAATTTACAGATCTTAAGCATCGTTTAGAGAGTATTGTTGATCCGGAAAAGGACAGTTTGCGCTATTATTTTCTTGGGGCCAATTGGAAAAGACGGGTAGAGCATTATGGAATTAAAGAAACCTACGATCCTGAAGGCATTCTAATTATTGATGCGAACCTATAGCTGGCATTAATTTTCTATTGGTTTCGCACTGACCAAATATAAAAGGATTTTTGTGTTATCTTCTAATTTCTTGCAAAATAAAACCTCATAAAAAATTGATTCGCGAAACAAAGCTTAACAAGCCTTGCGATTAAAGGTTTTCCACTTTGACAG # Right flank : CGTTGTTTTATAGTGTAATTTTGCAGAATCTTTGTCCTAGCGATTTGCACAATAATTAGGCTTAAAATTTCTATTCAAACTGCAAAATTTGCACAATTTTTGTTTGGAAAAACTTAAAAATTGCACAATATATGTTTTGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCCTGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //