Array 1 268898-270512 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSOE01000047.1 Escherichia coli strain upec-121 upec-121_ctg_871, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 268898 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 268959 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 269020 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 269081 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 269142 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 269203 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 269264 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 269325 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 269386 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 269447 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 269508 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 269569 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 269630 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 269691 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 269752 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 269813 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 269874 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 269935 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 269996 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 270057 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 270118 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 270179 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 270240 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 270301 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 270362 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 270423 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 270484 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 286014-286712 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSOE01000047.1 Escherichia coli strain upec-121 upec-121_ctg_871, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 286014 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 286075 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 286136 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 286197 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 286258 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 286319 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 286380 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 286440 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 286501 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 286562 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 286623 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 286684 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGAGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //