Array 1 56234-55248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIKY010000017.1 Halarchaeum solikamskense strain DSM 26612 Ga0451178_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 56233 37 100.0 35 ..................................... CGCTTGACGACGCCGACGACGTCGAGGACGCCGAC 56161 37 100.0 37 ..................................... ATCGACCGGACGACGAGCTGGTCAGCCGCCGGGTTCG 56087 37 100.0 35 ..................................... TTGCCGGGGCCCTGACGGCTGGACATGAGGATGCG 56015 37 100.0 36 ..................................... CGTACTGGCTCGCCGCCTCACGCACCCGAGCGAGCT 55942 37 100.0 36 ..................................... ACATCGGCGCACCGTCCTCGTTGTCGTTGTCGGCCT 55869 37 100.0 37 ..................................... CGGGCGCATCGGCGGCTCGACGACGTCGGTGGAGGGC 55795 37 100.0 36 ..................................... ACTATCTCTCGTGGTCGATCGGCGATCAGGACTATT 55722 37 100.0 37 ..................................... GTGGGGCGCAGACGCTCGGCCAGGATCGCGAAACCGA 55648 37 100.0 35 ..................................... CTGTTGCGCGTCGAACGAATAGCGATAGTCGTCGA 55576 37 100.0 36 ..................................... TGTAGTCGGGTGAGTTCGGCCCGGACGAGCCGAACC 55503 37 100.0 37 ..................................... ACGGGACGCGCGACGTCGACGTCGTCGGTCCCGACGG 55429 37 100.0 35 ..................................... CGCACCTCCCGGTCTGGGAGGTTCGGAAGCGGGTG 55357 37 100.0 36 ..................................... CCGTCGGACCGGGCGACCTCGTCGTCCTGACGGGGT 55284 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 14 37 100.0 36 GTCGAAGCGCGGTAGAAACCCAGAACGGGATTGAAAC # Left flank : CGCTCAAAAGATCCACAAGCGACGACCAATCTTACAAGAGACGCTCGCTACCGCTACACAACCGAGGTGTGAGGCTTAACTAAAGACGGATGCTTCGATCCACGAGATGCTTCCGCTCGCCGTCT # Right flank : CGCCGTTCAGGACGTACACCGACATTCCGGACACGCCAAGGATGACGTTGGCAGGAACTGACTGACTGAGTGAGAAGATCGGCTTCCGACTGAGAGATCACCCAAAACGAATGCATATCCGAGGTAGATAACGAAGGCGATAACGCTCGCTCCGGGGCCGAGTTGGCCTAGGCGGACGAGCGCGATGCGTCCGTATGATGCCGTCGCTCGTTTTCCGATACCGTGCTGGTGGACGTGATATTCTCGCTACTTCCAGGTGAACCACCGTGAGAGCCACGAGCGGAACGTCCCGTGGCGCTTGACCATGATGACCGTGCCCTTCGCTCGTTCGCCGACAGCTTCGGGAACGGCCCCGAAGACGAGTTGTTGGAGGAGGCCTTCTCGTGACGACCCGATCACGGTCACGTCGTATTCTCCCGACGCGTCGACGATTTCGTCCACGACGTTGCCTTCAAGAACGCGCGTTCCGACCGTGACGTCGTCGGCGAGCGTCGATACGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAGCGCGGTAGAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA // Array 1 292-107 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIKY010000009.1 Halarchaeum solikamskense strain DSM 26612 Ga0451178_09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 291 38 100.0 35 ...................................... GCTGAAGGTCAGCGTCTCCGGATCATCGACCTCCT 218 38 100.0 36 ...................................... CGTGGACGCGCTCGCTCCAATGCTCTGCACAGTCGC 144 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 3 38 100.0 36 GTCGAAGCGCGGTAGAAACCCAGAACGGGATTGAAACT # Left flank : CACTTCGACTATCGCGTGAGCCGTCGGAAGGCGATCCGACAGCAAGTGATCCTCCTGCGGAAAGCGATCACAGGTGAACTCGACGACTACCACGCGCTGGAGGTATCGAGATGAGGTTGGCAGTGACGTACGACGTCAGCGACGACGGGAATCGGCGGCGCGTCTATCGGACGCTCGAACGATACGGCGCGTGGCGACAGTACAGCGTCTTTGAAGTCGATGTCTCGAAGAGCCAGCGGGTCGAACTCGAAGACGAACTCGAGAGCCACATCGAGCCAGCTGATGGCGACCGTATTCGATTGTATCGACTCTGTGAGGCCTGTCAGAAGGCGACGACCGACCTCGGAACGGAGCCACCGGACGAGCAGTCGAACGTTATCTGACGTCCCCCCTTCGTGGACCTTTTTCAAAGCCGTGTACAGCAGGGGTCCACGAACAACCGCCGCTCTCTCCTACCGTCAGAGAAAACTATAGGTGCTATCCCCGACAAAACACCCCCT # Right flank : TCTTCGATCCACCATCCGTCTTTAGTTAAGCGAGAAACCGCGTGATAGCGGCGGCTTATCGAGGCATCTTTCGGAAGGAATGAGGAAGTCCAGTCTGTGTACGACAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAGCGCGGTAGAAACCCAGAACGGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA // Array 2 11184-12094 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIKY010000009.1 Halarchaeum solikamskense strain DSM 26612 Ga0451178_09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 11184 37 100.0 35 ..................................... GTCACCTTCGGCACCACCCACACCTAACCACGACC 11256 37 100.0 36 ..................................... ACGTCCGCGACGCGACGCTTCAAGCGCACCACTACC 11329 37 100.0 37 ..................................... GAACCTCGCACGTGGCGAGGACGCGCCGGGGAGGACC 11403 37 100.0 35 ..................................... ACCCCTGCTCGTCGATCGAGTCCGCGACCTGCTCG 11475 37 100.0 36 ..................................... ACGGATCGACGACGTCCTCGACGTCGGGCTCGTCGT 11548 37 97.3 33 ....................T................ GATCGACGGTGCGATCAGTAAGGGCGCGATCGG 11618 37 100.0 37 ..................................... TATTGATCCGCAGCCAGTCGAGGGCATCCGCGTCACT 11692 37 100.0 38 ..................................... AGCGCGGTGTGGTACCGGAAGCAAACCGCGAACGGCAA 11767 37 100.0 35 ..................................... ATCCTGGGGGCCGTGCTGTGCGAGTTCCGCGACCT 11839 37 100.0 35 ..................................... ACCCGGTCGCCCTCAAGGAACTCCGACACGCTCAC 11911 37 100.0 35 ..................................... GGCCGGACGCGATCGTTGTCGACTCCGACTACTTC 11983 37 100.0 36 ..................................... CGAGGAGCGCGGTCTGATGAACGTGAACGACGTCGA 12056 37 89.2 0 ..............................G..G.TG | A,C [12084,12086] ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 99.0 36 GTCGCAACGCGGTAGAAACCCAGAACGGGATTGAAAC # Left flank : CTAGAGGCGGCAGATGGAGCTGTCGTACTCAACTTCGATGGGGGGCCGCGAGAAATCTTCCTGCCGTTGACCGTCGCTGCGATTGCTCGACCGACCGTCGTTGACCTCGCTCTTCAGTTCAGAGACGTGGACGAAGAGATCGAGGAGCTCACGATTCCGAATCTAATGAGTCGTCCATCGGATGCGACCCTTGATACGCTCCGCTATCTCGTCTCTACTGCTGAAGAAATGACACTCCCCCAGCTCTCCAATGAGACTGATAAATCTCGGAGTACCGTCGGCCGACATCTCGATGCACTTGAGGCCGATGGCGCTGTCGAGACGTGGATGGAGGGGAAAACGCGCCACGTCTCTCCGACGCTCGCCGGTCAACTTCGCGTATGAGCACCATCTTCGTGGACCCTTTTCAAAGCCGTGGACAGGTGGGGTCCACGAATCAACTCTCCTCTCATGCGTCTTCAGAGAAAAGTATAGGTGCTTTGCACCGAAATAAGACCCCT # Right flank : GCGTGCGTTCGAGGTGTAACACGCTAAACGCGATTCCGAGGCCGGCGCTGGCGCTCAGTACGACTTGTACGCCGCTTACCGATCGACCCACCCTTGGACGGAGCACGCCGACTGGGGAGTTCGGGTTCCCGAGCACGCTCGCCGTTAAGACGAAACTTCCGAGAGCGAGACAGCCCAGACCGACCTTCGGGACGAAATCAACGGCCAGCGAGAGCAAACTCATGACTCGGGCGTGATCCGAAAGTGGTCGATGACCTCGGCGAGGAAGCCAGATGCGAATATGAATACGAAGGCGGCCGTCGAGATGTCCGTGAGATCAAGGCCGAATATCTCACGCGGGATCGGAGTAGCGGCGTAGATGATGTGTAAACACCACAAGGAGAGCGGTGTGAGGACGAACACAGAGAGGGCGATCGGAGCCTGCGCTGACGGCTCTTCGAGACTCGCGCCGAGTGCGAGGGCTACTGCCGAGCTCGTGAACAACCACGTTCCGAGCACGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACGCGGTAGAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : NA //