Array 1 39870-40813 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUBX01000016.1 Escherichia fergusonii strain YH17132 scaf11_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39870 29 100.0 32 ............................. GCAATGCTTCCCTATATGCACGCGAAAAAAGG 39931 29 100.0 32 ............................. ATCCGAATTGGCCCTACCGTTTCGATAGAGAA 39992 29 100.0 32 ............................. GGGATGAAAATAAAATTGATGGCGCGGTCGCT 40053 29 100.0 32 ............................. TTCCGCCGATTCCTTACGCTGTAGATATCGAG 40114 29 100.0 32 ............................. TGGGGGGAATATTCTGATGGCGAGACTGGTCA 40175 29 100.0 32 ............................. GCGATCTGTTGGTTGTTTTTAGTCAGTGCCAC 40236 29 100.0 32 ............................. CGAGGTGCCACCTGTGTTATTTGATGCGATTT 40297 29 96.6 32 .................T........... CCCACCACCGCGCTGTCGCCGTACTCCGCGCG 40358 29 100.0 32 ............................. GACCGGACGGTAGCAACAATTTTACCGCCATC 40419 29 100.0 32 ............................. GGCGGGCCACGCTCCATGAGTTAAGGACTGTC 40480 29 100.0 32 ............................. TCGCGCCAGAACTGGAGGATCTCCTGGTTATG 40541 29 100.0 32 ............................. ATGGCGCAGGGGTTCGTTCAGTCCAGTGTGCC 40602 29 100.0 32 ............................. CGTGTAGTAACCGTCTGAAGTACGTGGCGCAT 40663 29 100.0 32 ............................. TTGGCGAGATTGTTAATGTTGCGATGTCTCAA 40724 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 40785 29 75.9 0 ........A..T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAAAACCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 55620-56685 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUBX01000016.1 Escherichia fergusonii strain YH17132 scaf11_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55620 29 100.0 32 ............................. CGGGGCTGGTGGTTTTAATTATGCGGCGTTGT 55681 29 100.0 32 ............................. CTCGCGCATATCTCCGGTCATCTGCGCACGGA 55742 29 100.0 32 ............................. CGATTATGAGTCATGCGATAAATAGTTACCTG 55803 29 100.0 32 ............................. CAGTCACAACAAGCGATGATGTAATAATTAGA 55864 29 100.0 32 ............................. AAAATACATTTTCAATAGACGGCGTAACGCTG 55925 29 100.0 32 ............................. GCATTTTTGCCGAGGGATTTTCAGAGAGTTTT 55986 29 100.0 32 ............................. CGTATATTCAGGAATATAACACCGGAAAACCA 56047 29 96.6 32 A............................ CGAATTATTAACGGCGTGGACGTTTTGGCGGG 56108 29 100.0 32 ............................. TAATCACTCAAATCGATCAGGTTGGGGAGTCT 56169 29 100.0 32 ............................. CTGAAAACCTTGTTGACGCGCTATTCAGACAG 56230 29 100.0 32 ............................. GAATTGCGGGTAACAGATTTGCCCGGTAAGCC 56291 29 100.0 32 ............................. CCCACATTCTATTTTGTTGAGCAGGAGTCAAA 56352 29 100.0 32 ............................. CGCCTTTCATACTCTTTAGTTTATATTTCGAA 56413 29 100.0 32 ............................. GCTGTAAACCTTGCTGTAAAAGGCCATCGTTT 56474 29 100.0 32 ............................. CCAGTGGCTTGTCTCCCGTTAAGGTCTAAAAG 56535 29 100.0 32 ............................. CATTACGTAAAAGCGTAGAAGGCGAAAATCAC 56596 29 93.1 32 .................A........T.. GCAACGACGGTGAGATTTCACGCCTGACGCTG 56657 29 89.7 0 .T.........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCTCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGTAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTGAGA # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAACTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCCGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //