Array 1 16714-12422 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRTL01000004.1 Flavobacterium psychrophilum strain 4 contig04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 16713 46 84.8 30 TGC.G...G..TC................................. ACACCCCATTTGCTGTAACGCAAGTTTTCG T [16706] 16636 46 100.0 30 .............................................. TGCCGAATCAATATTTAAAATAGCTGTTAT 16560 46 100.0 30 .............................................. ACAAGGCATAACAGTCGTTTCGCTCAATGT 16484 46 100.0 29 .............................................. TATTACGCTATCTAATCCCGAACGTGTCG 16409 46 100.0 30 .............................................. TTACAATTTTAGATTTTACCTCCGAAACAT 16333 46 100.0 30 .............................................. CCTAATCTTTAAATTTAAAACAATGAATAC 16257 46 100.0 30 .............................................. AGTTGAGCAAACTTACCTGCAACGTTCCGC 16181 46 100.0 30 .............................................. CGAGTGCATTATAAATTCGGGGTGGTTCTT 16105 46 100.0 30 .............................................. AGGCTCAAGTTATACCGATATGGCATTTAA 16029 46 100.0 29 .............................................. TATTGAATAAAATTCTGTTGGTGTTAATT 15954 46 100.0 30 .............................................. CCTAGGTGGTTAATTGATGCGGTTTGTACC 15878 46 100.0 30 .............................................. TCGGTGAGGAAAGTGTTCGTTCTGTGGCTG 15802 46 100.0 29 .............................................. TTTTTACTTGCATGTTAATTTTATTAATG 15727 46 100.0 30 .............................................. TCATCTCTTTGCAGTACTTTAAATAATCCT 15651 46 100.0 30 .............................................. GTTAGCTTTAGCTTTTAATTTATTCGCATT 15575 46 100.0 30 .............................................. AGATAGTAGCAAATGTTAAATAAATAAAAA 15499 46 100.0 30 .............................................. AGGCTCTAAATTCTAATTCGCAATCATCAC 15423 46 100.0 30 .............................................. TTGTTTACCCCGCCCTCGGTGTTCTCGGTG 15347 46 100.0 30 .............................................. TAAAGCGTTAGGTGCTGCGACAGCGGTTGC 15271 46 100.0 30 .............................................. CTTGTGAAGGCGCAAGATTGGTATAAAGTT 15195 46 100.0 30 .............................................. TTTGTCGGTGTCATTTGGTTTATGACCGCC 15119 46 100.0 30 .............................................. ACACGTTCTCAAATGTTAAAACTTTAATTT 15043 46 100.0 29 .............................................. TATTGGGAAACTTCCGTTTTCATCTACAG 14968 46 100.0 30 .............................................. TTGTACTTGCTATTCGCATTTAACAATTCC 14892 46 100.0 30 .............................................. TTACGGAACTAGGACAAAACAACACAGAAA 14816 46 100.0 30 .............................................. TGATTTGTGTTGATGAAATATTAAATACAG 14740 46 100.0 29 .............................................. TTGATGAGCAGTATTATTTAGGCATTACA 14665 46 100.0 30 .............................................. GGACATAGCCCTATTAACAGGGCTAGACGG 14589 46 100.0 30 .............................................. AAAATCAAAAATTGACAATCTAAATTTTAC 14513 46 100.0 30 .............................................. AAAGGTATGATTTAACTATTAACGATTTGG 14437 46 100.0 30 .............................................. ATAAATTAATAACTAAAGCCTTAATTGCTA 14361 46 100.0 30 .............................................. TTGTTTACCCCGCCCTCGGTGTTTTCAGTA 14285 46 100.0 30 .............................................. AAAGGTATGATTTAACAATTAACGACCTTG 14209 46 100.0 30 .............................................. TTCAAAATCTCCATGAAGTTTACAAGTAAT 14133 46 100.0 30 .............................................. CCAGTTGAAGACACTTTGTCTGTATCAACT 14057 46 100.0 29 .............................................. ATCCATTTTAATAGTATGTAACTGTTTTT 13982 46 100.0 30 .............................................. CTGACGGCAAACACGTGTTATAAGCAGGCT 13906 46 100.0 29 .............................................. AAAATTCAAATATAGAAAGAGCGATTTTT 13831 46 100.0 30 .............................................. AAAAATAAAAACATGATGCACGTTCGTGGA 13755 46 100.0 30 .............................................. AGAGCTTTTGCAAAATCTAGCAAGGCTATG 13679 46 100.0 30 .............................................. CACAAACAAATGAGGTTCCAACAAGTCTCG 13603 46 100.0 30 .............................................. ATAAAGAGCAAGTTCCAAGGATTGTTACAG 13527 46 100.0 30 .............................................. CAAAACTAATTTTCGACGGTATAAAAGAGC 13451 46 100.0 29 .............................................. TTCGAACTTTTTTTTGATATTTATTTGGT 13376 46 100.0 30 .............................................. ACATTTGTAATCTTAGAGGATTATTTAGAT 13300 46 100.0 30 .............................................. GCGTATGTTGTGTTTAGACTTTAAAACATA 13224 46 100.0 29 .............................................. GAGTTGTTTTCTATTGATTCCACAGCAAG 13149 46 100.0 30 .............................................. GCAAAATTTCGTACATAATTGCAAATTTAG 13073 46 100.0 30 .............................................. GCCTAATGATTTTGCGATTAAGTTGTTCCG 12997 46 100.0 30 .............................................. ATTGAAGGACAACAAAACGCTTTAAAATCA 12921 46 100.0 30 .............................................. TTTAGGAGCCGATGGAAATGCAACAGCTCA 12845 46 100.0 29 .............................................. CGAATTTTACGAACTTCGTCGAAAATTTG 12770 46 100.0 30 .............................................. TGGTTTAAATTAAAAAACAAGCCGTCTGAT 12694 46 100.0 30 .............................................. GGATTTAATGACATTGAAGCCATTAAGGCA 12618 46 100.0 29 .............................................. TCTGGCATATCGCCAGCGCCTTCACCTAC 12543 46 100.0 30 .............................................. CATTTACAGATGATAAAACAGCCTCTTTAG 12467 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 57 46 99.7 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : CGAGTTCGAAAACATTGAAAGCAAAATCTTCGTTCGGGTCGTCGTAACCTGGTTGGTTTATTTTTCTGGCTAAAATTCTGGCACAAGTTGTTTTTCCTACGCCACGAGGACCAGTAAATAATAGGGCTGATGCCAAATGATTTGTTTCTATCGCATTTAGTAACGTATTGGTAATGGCTTGCTGCCCCACCACGTCTTTAAACGTTTGCGGACGATATTTACGAGCCGATACTACAAATTGTTCCATAAAAAAATATTCGAAAGCAAATATAATGGTAATAAGTGAAAATGCAAAAGTGAAAAMTMAAAYGTTTTAAAATGTTTAGCAGTATAACACAAAGTGTGTAAGTTAAAAAGTTATTCTGAAAATTTGAGCTAATTCAAAAAGCTCAAAAATTTTCGGAAATAACTTTTTAACATTTTATATATTTACATAYTSTTATYWTWGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTT # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGCTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTGTGTACTTCGGCATTTTCTCTGCTGGCACAAAACCGCATATAGATCGAAAATTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTGGGCAGGTCAAAAAATACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 105749-106297 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRTL01000002.1 Flavobacterium psychrophilum strain 4 contig02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =================================================== ================== 105749 42 100.0 27 .......................................... ACTGAAAAAAGCACCATTTTCAATATC 105818 42 85.7 51 ..............................C..GGT.TT... ATGCTCAAAAGCATCCTCTCCAATAGCAGTCACAATATAGTTTCTAATAGT 105911 42 92.9 27 ...T...................T....A............. GCCTGCAAAAGACCCTTCTCCGATAGT 105980 42 100.0 27 .......................................... CTCTGCAAAAGACCCATCTCCAATAGT 106049 42 100.0 27 .......................................... ACTGAAAAAAGCACTATTTTCAATATC 106118 42 100.0 27 .......................................... ATCTGCAAAAGCCTCATCTCCAATAGT 106187 42 97.6 27 ............................A............. GCCTACAAAAGCATACCTTCCAATAGA 106256 42 78.6 0 ...TG.............A.....C.........TT.TTG.. | ========== ====== ====== ====== ========================================== =================================================== ================== 8 42 94.4 31 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : AAAGGAATTAAAATGACAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTATTGTATAATGATTGTTTTTGTTGCCTTACCTTGGTTTGTCATTACTTCTACAAAGTAATTTCCTTTTGCAAAGCTTGAAACGTTTGTTTCTAAATGATTAGTTGTTTTGATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTGTAATTGTAAGCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAACTGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAACCACCAGAAATAGGGCTGAAATTTCTCCAAACCGCGGCTGCCTGATAAGCGACTTGCGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGAGTAATATTGCCGAAGACATTTGCATTAATAACTAAAGGGCTTGTAATATGGCAATTTACTGTCTTTAAACTTCTACAGCCTGCAAAAGCATCCTTTCCAATAGC # Right flank : AATGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAAYYAGCRTTYCTAGCTACCTTAACAGTAAAAGGAGMTSTTGAAGAAGTAAYAGTATAWTTTATGCCGTTTGCTGTAAAATCTTGTGCTATTCCTAAAAAAGGAATTAAAATAAAAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTAAAAAATTATGGGGTTTACAAAAGTAAGCTAGATTTAGAATAAATACAAATAATACTTTATTTTTTTGAGATTGGTCTTTAAGTAGGTGTTGTTTCTATATGCCTACAATTGTCTGATTTTGCTGTTCTTTTTGTTATTTTTTAGCCGTTGTATTTGGCTTTACAAACGATTAATTAGGTGCTAAAATTCATTAAAATATTGCTTAATGTTCTTTTTTATATAGAAGCTTTTTTTGTATAATGTTATGAATAGAAAAAGG # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.15, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //