Array 1 4403-5100 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_UKHX01000052.1 Klebsiella pneumoniae strain EuSCAPE_FR036, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
      4403	    29	  82.8	    32	AGTA.T.......................	TTCTCTCCGCCGGGCAGTGTGATGCCGGAGGG	
      4464	    29	 100.0	    32	.............................	TAAATCAGCAAATCTTGTTGTCTACCGTGTCG	
      4525	    29	  93.1	    32	............TC...............	AAGTTATTCATGTCGCCATTCACGTCGGCGGC	
      4586	    29	  89.7	    32	.....T......TA...............	AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG	
      4647	    29	  93.1	    32	............TG...............	CCGACCCGGTGCCCAGGAGAACTGGCTGAATA	
      4708	    29	  93.1	    31	.............G.A.............	TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 	
      4768	    29	  89.7	    32	.............A.T..........T..	CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC	
      4829	    29	  93.1	    32	............TC...............	TTACGCATTGTGATCAGGATTCGCTTCAGACG	
      4890	    29	  93.1	    32	.............A.....T.........	AATGGTGACAGGCAGTGCACCGGCCTGGAGGA	
      4951	    29	  89.7	    32	.....A......TA...............	TCGCCCAGTCCAAAGGGGATGATGCAGGATTG	
      5012	    29	 100.0	    32	.............................	GGCATGAGCGCGAACCACTGCGAGAGTGTGGT	
      5073	    28	  86.2	     0	..........A..A........-.....A	|                               	
==========	======	======	======	=============================	================================	==================
        12	    29	  92.0	    32	GTATTCCCCCCGCTTGCGGGGGTTATCGG	                                	       

# Left flank :   TGATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAGGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACTGGCGCAGAACTCCGCCATCGCATGAGTATTAAAAATGCGACTGATGAAGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCTGCCGAACCACGTTTTGGGGGGCATGCGAATCATAACTGCGGTCTGGTTGAGGCTCACTGGACAGTAACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTATTATTTTATAATCAACCGGTTATTTTTAG
# Right flank :  ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACATGATCGGCTTCTCCGTCACATTCTTTCAGCTCAGCACCGAAATCACCGCAAACTTCACCTGCATACTGATTTACTTTTTCCAGATGTAACTCACCGAAAA

# Questionable array : NO	 Score: 5.15
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTATTCCCCCCGCTTGCGGGGGTTATCGG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.10,-12.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [10-11] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.18,0.74   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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