Array 1 58518-59218 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIEA010000027.1 Escherichia fergusonii strain EF112 112-1-p_(paired)_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 58518 29 100.0 32 ............................. ATCCGCAGAAAGTTAAAGCTGAGTATGCTGCC 58579 29 100.0 32 ............................. AGACTGCCGATATTATCGACCCCAACAATCCA 58640 29 100.0 32 ............................. TTGCGGCGGCAAATGAATTCGGGCCACACGCG 58701 29 100.0 32 ............................. GCGGCGATCATCTTTGACGCCGACCTGTTTCG 58762 29 100.0 32 ............................. CGGCTGATAGCGACGAAATTACCAAATACCTG 58823 29 100.0 32 ............................. GTACCGCGACTCACCAGATAGAAATAACGCAA 58884 29 100.0 32 ............................. ACAGTTGACGCGTCGGTGCTGTGCCAGTTCGT 58945 29 100.0 32 ............................. TTCGTCGGTGACATCACGTCGGCGTCACCGTC 59006 29 100.0 32 ............................. CCCATAATCACCTCTACGCCCGCGCCGAAACG 59067 29 100.0 33 ............................. ACAATAACAAAAGAGCAAGTCGCACGTTTGCGC 59129 29 100.0 32 ............................. CCCGGCGAACCGTCAACAACCGCTGATGACGA 59190 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGGTAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCTCGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTGCTCATTTATATTCTTTGTCGCCTCTGAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTCTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCAGTGAAGTTTGGTAGGTTTTAGTGGGTATAGAGTTATCTAAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TTCCATAGCGACCTGCACAACCACCGGGGCAAGAGTTCCCCGCGCCAGCGGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGGTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 94881-95028 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIEA010000010.1 Escherichia fergusonii strain EF112 112-1-p_(paired)_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 94881 28 100.0 32 ............................ AATGGTGAATATGGCAGAAAAGCCCTTTGCGA 94941 28 100.0 32 ............................ TTCACTGGTAACATACTCCACCCGCCCACCAT 95001 28 82.1 0 ....................A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGTTCATCGTCGAGTTACAGGTTCAGTTGGATCAGAAAGGGGTTTCCCTGGAAGTGAGTCAGGAAGCGCGTAACTGGCTTGCTGAGAAAGGTTACGACCGGGCGATGGGCGCACGTCCGATGGCACGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGTTCGCTGGTGGATGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGATGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : GCGAAAAAAAAGCTCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTGGCTGCCAAACCTCATTGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTACGGACTTATACTTGCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACGCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8861-10169 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIEA010000038.1 Escherichia fergusonii strain EF112 112-1-p_(paired)_contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8861 29 100.0 32 ............................. CTCCAGAACAAACGCTTAATATAGGGATTCCT 8922 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 8983 29 100.0 32 ............................. TCAGTAAATGCCAGCAGCCTGGAGCCAGCGCT 9044 29 100.0 32 ............................. CCAGTAATCACGGACGCTCTCAGCGTCTTCGC 9105 29 100.0 32 ............................. TTGACGACGCAAAAAAATAATATCCGGCAGTC 9166 29 100.0 32 ............................. GCCGTGTTGCGCTCGCTTGTTACCACGCTTGG 9227 29 100.0 32 ............................. CCTGATAGCGCCTCCAGCCCTCGCCCTGGTGC 9288 29 100.0 32 ............................. CGGATATCGTCGCCGGTGGGGCGCTCCCAACC 9349 29 100.0 32 ............................. CTGCTTATTGCCATTGCCCCAGCAATACCAGC 9410 29 100.0 32 ............................. GCTCGGGAATAATCGAGTACGCCAGGAGTATT 9471 29 100.0 32 ............................. GCGATTTGTCGCGCATGTCACCGAATCGGAGA 9532 29 100.0 32 ............................. CAATTAGAAAACGCAATGACCCGCGCGCCCAT 9593 29 100.0 32 ............................. AGATTAAAGGGCCGCAGCATAACCCGGAGATC 9654 29 96.6 32 ............G................ GCAAACCGAAAAATACTCGCAGTATGCCTGTC 9715 29 100.0 32 ............................. AATTTTACTGATTCAGCAGGGCAAATGAAATC 9776 29 100.0 32 ............................. ACGTTTGCCAGTAATTTGGCTCGTCATGCAAT 9837 29 100.0 32 ............................. GTTTTTGCTGCTGCCAGATTACCGAATATAAC 9898 29 100.0 32 ............................. TTTGGTAGGAAAAAATATCACTGGTATATCTA 9959 29 100.0 32 ............................. AACATGAGTGGGCTTGGTTACATTCGGGGAGC 10020 29 100.0 32 ............................. TATTTGCCGTTCTTTCGCGTGCGCCGGGTGAC 10081 29 100.0 32 ............................. GTAATGCACTCACCACGGTTACAACAGATATT 10142 28 86.2 0 ......................-.CT..C | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGGCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACATTGGGCGATATCGGTCACCGGGGGCGCGGCGGGTGAGCATGGTCGTGGTTGTTACAGAAAATATCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTCCTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAGTTTCAGACCTGGGGTGAGAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAAACTCCTCAAGACGCCTTCGCCAACTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //