Array 1 401272-398328 **** Predicted by CRISPRDetect 2.4 *** >NZ_REFY01000001.1 Natrarchaeobius halalkaliphilus strain AArcht-Sl Ga0101036_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 401271 37 100.0 36 ..................................... TTCCCGACGATCGCGTCGGTCCGGCCGACAGCGGAC 401198 37 100.0 36 ..................................... CAAGCTCTCCCGAATGAGAGAGACTATTGCCGTTTA 401125 37 100.0 32 ..................................... TAGCGACATGAAGACCTGGATCAGACGGCAAG 401056 37 100.0 37 ..................................... GGCACATCTTCTTTGGCATAACCGATACCAGCGACAT 400982 37 100.0 35 ..................................... GATTCGGTTCTGATCACTTTCGACATTGACGATCG 400910 37 100.0 35 ..................................... CGTCGTCGGGCAGGAAGCGCGTCTGCTCCTGCTCG 400838 37 100.0 33 ..................................... GACGGCACCGACGAAAAGACACTCGGCGAAATG 400768 37 100.0 37 ..................................... CGAAGCTCCAGTACCGGATCGACTCCCACGACGATAC 400694 37 100.0 37 ..................................... CGAACCTCTATGCACTGGACATGACGCTCGCTGCAGG 400620 37 100.0 39 ..................................... ACGGCGGTAGTCTTGTAGGTGACATCTTCGGTGGCGTCG 400544 37 100.0 34 ..................................... GTCGAGAAGTGGGTGCATTCGGGACCGGCAACGA 400473 37 100.0 36 ..................................... TTTCCTCGAAATGCTCAATCACCGGTTTGGGAACGT 400400 37 100.0 35 ..................................... CTCAACGTGATCGCCGCCTTCAGCACGCCACTGTT 400328 37 100.0 37 ..................................... GATTAAGCGGGAGTCGTTCAGTGCCGGGTGTGGACAC 400254 37 100.0 34 ..................................... CGTACGTACTCGAGCGAATGACGAAAGACGACTG 400183 37 100.0 35 ..................................... CGAATCTCCCCAACGGCATCGCGAAGCGGATCGGT 400111 37 100.0 36 ..................................... AGCGATGAAGAGTTGATCCTATTCACTAACAGTGAG 400038 37 100.0 37 ..................................... ATCGCTCTTTGCAGATTCAGGTGGATGATGACTAGTC 399964 37 100.0 36 ..................................... GGGTTGACCGGGCCACATCGGGGGACTATCGCGGAT 399891 37 100.0 35 ..................................... ACCGTCCCGATCGGCTCGATCAGCGGCTCGAAGCT 399819 37 100.0 36 ..................................... TCACCCCTGGACATGTTGACCTCGACTTCTGCGACG 399746 37 100.0 37 ..................................... ATGCCCGTGGGTCAAAACAGCACAAGATTCCCGTCGA 399672 37 100.0 36 ..................................... CGCCCGACCGCGCTTCGTGGGGCTCACGAAGCATGC 399599 37 100.0 36 ..................................... CGCCCGACCGCGCTTCGTGGGGCTCACGAAGCATGC 399526 37 100.0 34 ..................................... GTAACGGCGGGGGTGGTGTGGTGTTAGTTGCCCC 399455 37 100.0 38 ..................................... TACGCGATCGTCGCCGCATCTTGGATCATGTCGAGATC 399380 37 100.0 36 ..................................... TGATAGTCGTAGGCCGTTCCGTCGGAGAGGCTATCG 399307 37 100.0 33 ..................................... ACATCGCCGTTTCCGAATGGCTCGACATCGACC 399237 37 100.0 35 ..................................... TGGAAGCCTCAGATGACTCGCCTTGGGTGAACGAG 399165 37 100.0 37 ..................................... ACAGAGCGCGACGTCTTCCAGGCGCTCGAGCTTTTCA 399091 37 100.0 36 ..................................... AGTGCAATGTGCTCCCGCGTCTTCGGGTGATCTGGC 399018 37 100.0 37 ..................................... TCAGCCATCCGATTGAGGATCGAGACGCCGTCGTCGT 398944 37 100.0 34 ..................................... GCTTCGACGACTGGGCGGCCGAGAAAGATGGTGG 398873 37 100.0 35 ..................................... TGAGTCGTCGAGTGGGTGAGGTGCTCGAGCGCCGC 398801 37 100.0 36 ..................................... GCGGCACTCCGATAATCGACATCGACTCCCCCGGCT 398728 37 100.0 36 ..................................... TCGCGCATGTACGGTTCGTTGCTGACGAGCTCCGCT 398655 37 100.0 34 ..................................... ATGACATCCAATCACCACCCCTTGGCTAATGTTT 398584 37 100.0 36 ..................................... AACCGCTGAACGTCTGCTCGCAACGGTCGCACTGGT 398511 37 100.0 36 ..................................... AGCACAAGAAAACGCAAGACTGCGTCTACGTAAGTA 398438 37 89.2 37 ..T....CC..G......................... CGTGACGCTCTCGCGCTACGATTCTGATGGGACGGAG 398364 37 89.2 0 ..T....CC..G......................... | ========== ====== ====== ====== ===================================== ======================================= ================== 41 37 99.5 36 GTCGCAGAAGGCAGAAAACCCAGAACGGGATTGAAAC # Left flank : GTACTTCGAATATACTGTGTCTCGTCGAAAGGCCATTCGTCAACAAGCAATCCTGCTTCGAAAGGTGATCACCGACGAACTGGACGACTACCACCCGCTTACTTTCGACCGATAACCATGCGACTAGCAATTACATACGACGTCAGCGACGACGCGAACCGACGACGGGTCTATCGCACTCTCGAGCGCTACGGGGCCTGGAAACAGTACAGCGTGTTCGAACTCGAAATTTCGAAAACCGATCGCGTCGAACTCGAGGACCAACTCGAGTCACAGATTTCTCCAAGTGACGGTGATCGAATCCGAATCTATCGACTCTGTAGTGCCTGTCAAGACGCAACGACCGATTTGGGTGATGAACCACCTGATGAGCAATCGAACGTGATCTGATCTTCGTCGACCTTTATTAAGAATCTGTACAGCCCCTGTCGACGAATCTCGAGGTTGTTTTGAAGCAATAAGAAACGTTTTTGATCCGTCTCGACGTATTTTCACCCCCT # Right flank : ACTGCGATGGTCGTCTCGCGTGATTCGGTCTCTCCTGGGACTATTCTCTCCTCACGTCCGTTCGTCGCAGAATAGTCCGGGTGCGAGAATGAACCGAAGGAAGACGGTCGCCTCGCTTCGCTCGACGCTGCGACTTCCAGGGTTCGATCTCTCCTTCCGGCTTTTCCACTCCTCCCGATAGTCGTCGTGAAAAAGTCCGGGTGCGAGAATCGAACCCGCGTCTCAGCCTCCACAAGGCTGAAGGATAACCACTACCCCAACCCGGACACGTGTTGCAAGTTGAGTTAGGGGTGGTTGACCTGAAATACGTTACGACTCGAGTACGGGCGGTGTGTCAGGCAGTGCCGAATCGTCGCCAGCGCCGACGAGGCCGATCGCCCGTGATCGAGACGTTTTTCGGCGGTGGGGCCGTACCCCTTCCAACGCGTGGCTATCACCGATAAGATCTACGTCAAAAACCACCGTCAACTCAGCTCCCAGCTCGAGACGAACATCCCGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGAAGGCAGAAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [3,15] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : NA // Array 2 412014-418979 **** Predicted by CRISPRDetect 2.4 *** >NZ_REFY01000001.1 Natrarchaeobius halalkaliphilus strain AArcht-Sl Ga0101036_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 412014 37 100.0 37 ..................................... AACGTCGCCGTCCCAGTCACGGTTTGAAAAGAGTCGC 412088 37 100.0 34 ..................................... ACAGCGACCCACTCATCAGTGGGGACATTCCCTC 412159 37 100.0 37 ..................................... TTGCTGTTCGTCGTGACGGATATCGATCTAATCGTGT 412233 37 100.0 35 ..................................... CTGATCAACGAGCGCGGCGGCTGGAACGAGAGCGG 412305 37 100.0 37 ..................................... ACATCGACGACGACAAGTGTCCATCCGGCTCCGCCGA 412379 37 100.0 35 ..................................... ACCATCTTGCCACTCGTCGCCATCGAATGTCCGGA 412451 37 100.0 35 ..................................... ACGGAAATGAAGTGCCGCAGAACACCGAACTCCGG 412523 37 100.0 37 ..................................... AGTGATGACGGGTACGACGAGGCCGCTGATAGAGTAT 412597 37 100.0 36 ..................................... GCGGCTTCGGCGTCTCGAGTTCGCTGTGGCGGTACG 412670 37 100.0 38 ..................................... TCGTCCTGCTGGACGTCGTCGAAGACCATGACGAGAAC 412745 37 100.0 37 ..................................... AAGTCCGAGATCCAGTCGGGCCGGGCTGCGTCCGCCG 412819 37 100.0 38 ..................................... ATCGTGATGACTGCGAAAAAGCCGCCTTTAATCGCCTT 412894 37 100.0 37 ..................................... CCAGGCCGAGTTTGCTGAGCGCTGTCTTGATCTTCGG 412968 37 100.0 36 ..................................... CGCTCGAAGTACTCTGGATTGATCGTGATCAGGTTG 413041 37 100.0 38 ..................................... GCGGTACGCCACGAATGATAGACCCGCCGCTCGCTGTG 413116 37 100.0 34 ..................................... CGTACCGAAAGATGTTCCGAACGAGTGGTTTGAG 413187 37 100.0 37 ..................................... ACGGCGATGTCGGGCAGCCCAGTCCGTGGTTGCAACC 413261 37 100.0 39 ..................................... GAAATAGGGACGTGTGCCTTTCTCTTGGGCAAGCATATA 413337 37 100.0 36 ..................................... ATATAGCCGTTTCCAGAGTCGGACACAACCGCGTTA 413410 37 100.0 37 ..................................... GAGTGCCTCCAGCAACGTTTTCGTCGATCTCTCGCGC 413484 37 100.0 34 ..................................... AATAGATGCGAGAAAAGCACTGTATGGTAATAGG 413555 37 100.0 38 ..................................... GATGCGGTTCAAGCAGCGCGTTCACGACACACTATTGG 413630 37 100.0 36 ..................................... TTAGACGAGCTTAAGTCAACGTATGGCTTGAGTATA 413703 37 100.0 37 ..................................... TTGGTGGTGCGGTGATTCCATCGGCCTTGTTCAAGAC 413777 37 100.0 35 ..................................... CGCTCGGCCTGACTGTTGTGGTCGTCGTTGAGTGC 413849 37 100.0 35 ..................................... TTCACCTCGGACCCGCTCGCGGGTCCCTCGCGAAA 413921 37 100.0 36 ..................................... AGCGCGCCAAAGCGCATCGACCTCGATCTCGAGAAT 413994 37 100.0 37 ..................................... TGCCGACGAGTGCGGACTTAGCCGACGCGCCGAAACC 414068 37 100.0 35 ..................................... AGTGCGGGGGATGGTCCGAACGACGACGTGTCCTT 414140 37 100.0 37 ..................................... GAATGGATGACTCGGTCGGATGATGAAATCCTTGAAG 414214 37 100.0 33 ..................................... CGAGATCAACGGATCGTACGACCCGGCGAAACG 414284 37 100.0 38 ..................................... CTCGATTGCCGTTGGGGAGGAATACTGCCGAACGATAC 414359 37 100.0 37 ..................................... CGCCCAAAGGATATCCTCGAGCTGATCCTGAGAGTAC 414433 37 100.0 36 ..................................... TCTGGCACGACGACCCTCGCGTTTGCGAGTTTTGGC 414506 37 100.0 36 ..................................... TCCTCGGGGCGTCGGAGGGCGACGGCGGCGGGTTCC 414579 37 100.0 34 ..................................... ATTTCGGGATAGGCGTCGTCGATCGTGGCCGTGA 414650 37 100.0 36 ..................................... CGCTGATGGCCGGGAACCCGCTGTCTGCGATCGCCG 414723 37 100.0 37 ..................................... TAGTCCGCTCCGAGCGTCACGCGTCCGCGATCGTCGG 414797 37 100.0 36 ..................................... GTTCGCATCGAGATACGAAACAGGCGAAAATAGCGA 414870 37 100.0 36 ..................................... AGGAGAACCTCTACATCGAGATGGACGCGCTCGAGA 414943 37 100.0 36 ..................................... GCCGCCGTGTGATCCTCGTGCCAGTTGATCGGTGGC 415016 37 100.0 37 ..................................... CACCCGTCGCAGTACTCGTCGCCTGAGAAGCCGCCGA 415090 37 100.0 37 ..................................... AACTCAAAGGCACCACCAACGGCGTTCTGGTACTGCC 415164 37 100.0 37 ..................................... TGTCCCGTCCGTTCATCGCTGCGGAGAGGTCGCAAAG 415238 37 100.0 36 ..................................... TCTTCGGGGTCGATCATGCTTTCACCCGGCCGTCTT 415311 37 100.0 37 ..................................... ACTACCTTGATGTGAGCTTCGACTTGGTTAACCAACC 415385 37 100.0 36 ..................................... CCGGGCCAGGGTTCCTTGTTGTAGTCCTCCCAGTCG 415458 37 100.0 35 ..................................... CGTGTAGAACGTCTTGTCGACAAACTCAAAGACAG 415530 37 100.0 35 ..................................... ACGCATGATAATTTCGATCTGCTCGAAGTTGTCGG 415602 37 100.0 36 ..................................... ACCATTCCTTCCGGGCCGCGCGCGGTCGCACGCACC 415675 37 100.0 35 ..................................... CCACTGGAGGCGGCGTGCTCGGCTACACGAGCGCC 415747 37 100.0 36 ..................................... AGTTCGTCACCGAAGACCAGCTGAACGAACAACTTG 415820 37 100.0 36 ..................................... CTCCAGGGGACGCTGACGAATCCGTGGTGGGTTCGG 415893 37 100.0 37 ..................................... CGGGCCGGATGGACCGGGACATCTTCGGCCAGCAGGT 415967 37 100.0 35 ..................................... AGAACTCGAACAGAGGTCCGACGTCGAACAGCCGG 416039 37 100.0 35 ..................................... TTCGTAGTACGGGAGTGGTTCTGCGCTTTCGGGAG 416111 37 100.0 35 ..................................... CCGGATCGTCGCGCGCGATCTCGACCTGGAGATCG 416183 37 100.0 36 ..................................... CCGGATCGTCGCGCGCGATCTCGACCTGGAGATCGA 416256 37 100.0 35 ..................................... GGCAATGATTAACTCTGGAACGCACGATCGCGACG 416328 37 100.0 34 ..................................... CATTCTCACAGTGCTCGCACTCGATCCCTTCACC 416399 37 100.0 37 ..................................... TCCGATTTCACCCGGATCCCTTTAAGTACCCCCTCTG 416473 37 100.0 36 ..................................... ATTGGAGACGACGATCAACATCGGCAGTTCATGGAT 416546 37 100.0 34 ..................................... AACTGGTCGTCGACGGTGAACTGGTAATTATCGA 416617 37 100.0 35 ..................................... ACGTCTCGAGGACGCGGTAGGCACCAACGCCTGCG 416689 37 100.0 37 ..................................... TCTCGGTCAGTTATCGGGAGTGGGCCGAGTAGTTTAG 416763 37 100.0 35 ..................................... TCGTCCCGCGGGCGCTCCGGAACGCAGCCGATGGG 416835 37 100.0 37 ..................................... CGCGGAAGCCCGTTGAGCACTGGGATCCACTCGATGT 416909 37 100.0 35 ..................................... CCACCCGACAGCGTAGTCGATAACTTCGAGGACGC 416981 37 100.0 35 ..................................... CGACTCGACTCGAGCCGCCGTACGACCTCGAGACG 417053 37 100.0 36 ..................................... AGATCGACCTCGCTGATTCCGAGACGAAGCTGTTTG 417126 37 100.0 35 ..................................... TGTGACGATGAACGGAACGGCGAACCCGACAAAAG 417198 37 100.0 35 ..................................... CGCGGGTGGCAGGATAAACTAACGGGGCCTCGCTT 417270 37 100.0 37 ..................................... CCCCAGACGTCGTGACGGAAGTCGCGAGCCTGCGGAT 417344 37 100.0 36 ..................................... CGTCCGACATCATCCCCGCGATCAAGACGATCCACG 417417 37 100.0 36 ..................................... ACGACTATGTTGTCGGATCGGATGACAGATACGACG 417490 37 100.0 36 ..................................... CATCCGTCACTGTGGATGTCGAAGCACCACCGACCG 417563 37 100.0 35 ..................................... GTCACTACTCGAGCGGTGTTGGCCGGAAGGAGTTC 417635 37 100.0 35 ..................................... GATCGCTGAGTCTCCCCGAGTTCTCGACCGGGCTG 417707 37 100.0 36 ..................................... GTTGCCTCCTCGAGTGGCTCCTGGACCTCAAGCGCG 417780 37 100.0 36 ..................................... GGCCTCTCCCCAAGTCTCTGAGTCGGCAGCAGACAC 417853 37 100.0 35 ..................................... GGTTCACTCCGCACGTCATCGATTGCTTCTATCTT 417925 37 100.0 37 ..................................... ATCGCCCTGGTCGGCGTGCTCGACGAACACCTCGATC 417999 37 100.0 34 ..................................... ACTTCTGGGGAGCAGGTGGTGAGTTCGAGGTTAT 418070 37 100.0 37 ..................................... ACGACGGCGAGAAGGACATTGTAGCCGAAGCGAAAGA 418144 37 100.0 36 ..................................... TTTCGGCTTGGGTTTCGACCGACCCATTGACCCTAT 418217 37 100.0 36 ..................................... CTATACGGTTGACTACGTTGAGGTTATCGGGGTTGG 418290 37 100.0 36 ..................................... CGTATCTTCCACGGCCAGAGCGCGTAAACTGGTTAG 418363 37 100.0 35 ..................................... AGAGAACCCAACCAAGGACACGGAAGATAGGCAGA 418435 37 100.0 36 ..................................... ACTGAACCCTTATCAATTGAAGAGTTCGATGCAGAA 418508 37 100.0 35 ..................................... TCACCTCAACCGTGACGCCGACGGCGAACGCAAGC 418580 37 100.0 37 ..................................... TTATCTCACAGTTGGTCCATGCAAGGGCGCTACTCAC 418654 37 100.0 37 ..................................... TTCGTGGATGGATCAACGGCTCGCGTTCAGTAGCGCT 418728 37 100.0 33 ..................................... ACTTCGGAGAATGGAAGAAGCGGCTGTTCAACG 418798 37 100.0 35 ..................................... GTTGATAAGCTCGTTCAGCCCCGAATCGGGAAGCT 418870 37 100.0 36 ..................................... TCTGTTCCGTCTCGAGGGCGCGACGTCGATCGTCCT 418943 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 96 37 100.0 36 GTTGCAGCCGGGAGAAAACCCAGAACGGGATTGAAAC # Left flank : ATCGGTAATAGTCAATCTCGGCGGTGGTGCTCGAGACGTGGTCGTCCCGCTGACGATCGCGACCGTCGCTCACGCACACGAAATCGACTCGATGGTTGGCTTCAGCGATATCGACGGCAACGTTCGCGAGTGGGAACTGCCGACGATTCCATCGAACACTTCGAGAGGGGCGACGGAGACGCTCGAACTGATCGGCGAGGTATCTGGCTCGGTCTCGATTCCGATGCTCGAACAACAGTGCGAACTGGCAAAAAGTACGGTCACACGTCACGTCAATCAACTCGAGACCGAAGGATTAGTCACGTCGCGGACTAAAGATCGAACGAAACACGTCGAGATAACGCTCGGTGGCCAGCTCTATTTGGCCTCGAGCGGGTCAGCCTGAGTGTGTCTTCATCGACCCATATAAACAGTCTGTACAGCAGAGGTCGACGAATTCCAATGTGGAATTCGACTGCGCAGGAAGTTTTTTAGCCCCTTTGTCCGTATCTCGACCCCCT # Right flank : CACCGCGGAATATATACACAAGACTCGCACCCGGACTTCCCGTGGCGCAAACTCGAGAGCTCACCAAAACCCGTTGGATTGAATAATCACGAGGGACAAACGGGACCCACGATGGAGTGTTGCAACTGCAACTCCGTCGGCAGACTCGAGAAGTACCAGCTCGTATTGAGAGGCGAAGACACGCTCGAGATGACGATAACCCTGTGTGAAGAGTGCGTCATCGACTTCCGCGCTACCGACTGGATTACGGTCCGCGGTGGCTCGGAACGGGCGACCGGACGCAGCGGAGTCGAAGGACAGGAGACCTAACGGTCGGTGTCCGGTGTGAGTGTGTCCGCTTCGAGAGGAGTGACGGACTCATCAGTGATCTACTCGCCAGTGCGTATTTCGAATCGAACGCCGCCGAGTGTATCATCGTCGTCCACGTAGATTCGCCAGCCGTGTGCGAGTGCGATCTGTCGAACGCTCGCCATGCCGAGTCCGGTTCCGCCGTTCTCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCGGGAGAAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA //