Array 1 68310-67372 **** Predicted by CRISPRDetect 2.4 *** >NZ_FLJW01000014.1 Klebsiella pneumoniae strain k2040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68309 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 68248 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 68187 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 68126 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 68065 29 96.6 25 .....T....................... AACATCAGTGGAAATCCACTGCGGC Deletion [68012] 68011 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 67950 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 67889 29 100.0 32 ............................. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 67828 29 93.1 32 .............T.A............. AGCAAATCGAAAATCCGGCTGTTTGAAAAATG 67767 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [67762] 67705 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [67700] 67643 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 67582 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 67522 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 67461 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT C [67456] 67399 28 86.2 0 ..........A.....T......-....A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 95.1 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 182853-180203 **** Predicted by CRISPRDetect 2.4 *** >NZ_FLJW01000005.1 Klebsiella pneumoniae strain k2040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182852 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 182791 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 182730 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 182669 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 182607 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 182546 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 182485 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 182424 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 182363 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 182302 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 182241 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 182180 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 182119 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 182058 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 181997 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 181936 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 181875 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 181814 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 181753 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 181692 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 181631 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 181570 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 181509 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 181448 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 181387 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 181326 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 181265 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 181204 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 181143 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 181082 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 181021 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 180960 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 180899 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 180838 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 180777 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 180716 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 180655 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 180594 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 180533 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 180472 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 180411 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 180350 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 180289 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 180231 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //