Array 1 117-1526 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCP010000026.1 Flavobacterium psychrophilum strain 96206 contig00026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 117 46 69.6 29 TAAT.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG 192 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 268 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 344 46 100.0 30 .............................................. AGATATATCTAATACTAGAGCGTACGACAG 420 46 100.0 30 .............................................. AAAAACAATATCGAAAAACTGAAAGAGAAT 496 46 100.0 30 .............................................. ATTTAATGTAATTGTACCCGAACCAGCTCC 572 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 648 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 723 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 799 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 875 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 951 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 1027 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 1103 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 1178 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 1254 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1329 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1405 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATATTTAGC 1481 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 19 46 98.3 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : ACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCAAAT # Right flank : CATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1-387 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCP010000068.1 Flavobacterium psychrophilum strain 96206 contig00068, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 1 42 100.0 27 .......................................... ACTGAAAAAAGCACCATTTTCAATATC 70 42 97.6 27 ............................A............. GCCTGCAAAAATACCCCTTCTAATAAC 139 42 95.2 27 .......................T....A............. CTCTGCAAAAGACCCTTTTCCGATAGT 208 42 100.0 27 .......................................... CTCTGCAAAAGCCTGATCTCCAATAGT 277 42 100.0 27 .......................................... ACTGAAAAAAGCACCATTTTCAATATC 346 42 97.6 0 ............................A............. | ========== ====== ====== ====== ========================================== =========================== ================== 6 42 98.4 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : | # Right flank : | # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.12, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : AGTCACAGAATTAGGAATTGTAACTGATATTAAACCAGAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 434-117 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCP010000062.1 Flavobacterium psychrophilum strain 96206 contig00062, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 433 41 100.0 28 ......................................... CTGAAAAAAGCACCATTTTCAATATCAG 364 41 100.0 28 ......................................... TCTGCAAAAGCATTCTCTCGAATAGTAG 295 41 97.6 28 .................................T....... CCGCCAAAAGCACCTCGATTAATAGTAA 226 41 97.6 28 ....................................G.... TCTGCAAAAACATAATCTCCAATAGTAG 157 41 78.0 0 ................G..G..C.........TT.TTG..T | ========== ====== ====== ====== ========================================= ============================ ================== 5 41 94.6 28 TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Left flank : | # Right flank : TTGTATAAAAGCAGATTCTCCAATAGCAGTCACAATATAGTTTTTTGAATTATAAGCTACTGTTTCTGGTATTACCGCAACTCCACTAAAATCAGGGTTTCTAGCTACCTTAGCAGT # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 1-248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCP010000070.1 Flavobacterium psychrophilum strain 96206 contig00070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 1 41 100.0 28 ......................................... ATCTGCAAAAGCCTCATCTCCAATAGTA 70 41 100.0 28 ......................................... CCTGAGAAAAGCACCATGTTCAATATCA 139 41 97.6 28 ...........................A............. GCCAAAAAAAGCAAAATTTTCAATAGCA 208 41 82.9 0 .................A.....C.........TT.TTG.. | ========== ====== ====== ====== ========================================= ============================ ================== 4 41 95.1 28 GTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : | # Right flank : ATGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 317-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCP010000071.1 Flavobacterium psychrophilum strain 96206 contig00071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 316 41 97.6 27 -......................................... ATCTGCAAAAGCCTCATCTCCAATAGT 248 42 100.0 27 .......................................... CTCTGCAAAAGCCTCATCTCCAATAGC 179 42 97.6 27 ............................A............. GCCTGCAAAAATACCCCTTCTAATAAC 110 42 100.0 27 .......................................... ACTGAAAAAAGCACCATTTTCAATATC 41 41 95.2 0 ............................A............- | ========== ====== ====== ====== ========================================== =========================== ================== 5 42 98.1 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : | # Right flank : C # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.13, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //