Array 1 49420-50661 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_PTHD02000028.1 Klebsiella pneumoniae subsp. pneumoniae strain CRK0340 CRK0340_NODE_21.ctg_1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     49420	    29	 100.0	    32	.............................	ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC	
     49481	    29	 100.0	    32	.............................	GAAACTATTTCGGAGCATCTCATTGCTGAGGG	
     49542	    29	 100.0	    32	.............................	TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA	
     49603	    29	 100.0	    32	.............................	TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA	
     49664	    29	  93.1	    32	............CA...............	AGGTATTTGACCTCATCCAGAAAGGCACAGAC	
     49725	    29	  89.7	    32	............CA..............C	CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG	
     49786	    29	 100.0	    32	.............................	TTACCAATGGGGAAAAATCTTCATTTGTAAAT	
     49847	    29	  93.1	    25	............CA...............	AACATCAGTGGAAATCCACTGCGGC       	Deletion [49901]
     49901	    29	  89.7	    32	......T.....CA...............	CGAAAACGGCAACCTTCATAAAAACGTCTTTT	
     49962	    29	 100.0	    32	.............................	CCGAGATTGATTAAAGCAAAGTAACGGCGGTG	
     50023	    29	  93.1	    32	............CA...............	CAGGTTATACTGGCAAAACGTCGATGGCTCTC	
     50084	    28	  89.7	    32	.....-......CT...............	TAAATCAGCAAATATTGTTGTCTACCGTGTCG	
     50144	    29	  96.6	    32	.............C...............	AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG	
     50205	    29	 100.0	    32	.............................	TTAATGTTTTGTTAATTTATGAGTGTGGTGAT	
     50266	    29	  93.1	    32	............AC...............	AGCAAATCGAAAATCCGGCTGTTTGAAAAATG	C [50271]
     50328	    29	  86.2	    32	............CT.A............C	CATGAGCCTGCGCACTCTGACGCGCACCTGCT	CC [50333]
     50391	    29	  93.1	    32	............CA...............	CCGACCCGGTGCCCAGGAGAACTGGCTGAATA	
     50452	    29	  93.1	    31	............C..A.............	TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 	
     50512	    29	  86.2	    32	...C........CA............T..	CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC	
     50573	    29	  93.1	    32	............CT...............	GGCATGAGCGAGAACCACTGCGAGAGTGTGGT	
     50634	    28	  79.3	     0	........T.A.CA........-.....A	|                               	
==========	======	======	======	=============================	================================	==================
        21	    29	  93.8	    32	GTATTCCCCCCGTGTGCGGGGGTTATCGG	                                	       

# Left flank :   GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA
# Right flank :  ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA

# Questionable array : NO	 Score: 5.41
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.48,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTATTCCCCCCGTGTGCGGGGGTTATCGG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.10,-12.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [5-25] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.18,0.74   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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