Array 1 391558-394476 **** Predicted by CRISPRDetect 2.4 *** >NC_016510.2 Flavobacterium columnare ATCC 49512, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================= ================== 391558 36 97.2 30 ......A............................. ACTATGTTGGAAGAATTTCACGATAATGTG T,TATAA [391559,391567] 391630 36 100.0 30 .................................... ATTTTATTTTTTTCAAAGGTCAAGGATGGA 391696 36 100.0 29 .................................... ATATTTTCTTTACTGATGAGACACCCTTA 391761 36 100.0 73 .................................... TCTGTTAATAATAGTAATCCCGTTTATATGGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGTG 391870 36 94.4 30 T.....A............................. TGTTGATGTTAGTGAAGCTTTGAATAATTA ATAAT [391879] 391941 36 100.0 29 .................................... GCCAGTTGGCACGTTCTTGATCAGTAAGC 392006 36 100.0 30 .................................... ATCTAATTCCAAAACATTTATTACATCTTG 392072 36 100.0 30 .................................... GAAAGACGTGAAGTTGAAAAAAATCGGTAC 392138 36 100.0 30 .................................... GAATACCAGTCGTTCTTCCCTCACCTTGAA 392204 36 100.0 30 .................................... TAATACTGATTTATTTCGAGTATCGCCCGT 392270 36 100.0 30 .................................... TGATTTAGGTATTGATTTATCAAAAGACAC 392336 36 100.0 30 .................................... CGGTAACGTTTGCCCGCTAGTTTATAATAA 392402 36 100.0 30 .................................... TTATGATGCGTTACAAAAAATGTTTTTAAA 392468 36 100.0 29 .................................... CATGCAGATGTTTTTCTACAAATTCACGA 392533 36 100.0 30 .................................... TTAATTGCAGAGATAGATTTTAGATTTTGA 392599 36 100.0 30 .................................... AAGGTATTTATTTTTTTGAAAAAAACTTAT 392665 36 100.0 30 .................................... GAAGAAAGATTCAGTATCTAAAAAAGATAT 392731 36 100.0 29 .................................... GATCAGGATTAACTTATAAATCGGACGAT 392796 36 100.0 30 .................................... TATTAAAAAATGTTTAGTAATACAACTATC 392862 36 100.0 30 .................................... AACAAAAAAAAAGGAGGTACAGGATTTGTA 392928 36 100.0 30 .................................... TTAACCTAAAAAATGACTCAAATAAACATT 392994 36 100.0 30 .................................... AATTCCTCAAGGTCAATTTTACATTCGATT 393060 36 100.0 30 .................................... AATCAAAGGTAAAAATAAAATGACTTTACA 393126 36 100.0 29 .................................... CTGTTAATGCAATTGCAAACGATATAAAA 393191 36 100.0 30 .................................... TTTTTATTTTATTTATATAAATGTTTTCCA 393257 36 100.0 30 .................................... AATGTTTTAGCTTCTAACGCTGCATTATCT 393323 36 100.0 30 .................................... CATTACAGGTTTATAATCAACTGGATTAGA 393389 36 100.0 29 .................................... TATTAGAAGAAACACGAGCTTGATCCATA 393454 36 100.0 30 .................................... ACAGGAGTTTCTGAGCAAACCATAGGTAAA 393520 36 100.0 30 .................................... ACATTGCGTTTCTAACTGAATTAACAGCGC 393586 36 100.0 30 .................................... CTTTTTTATCTTGATAAGATAATTCAATGT 393652 36 100.0 30 .................................... GTAGAAATGAAATAAAAACAATTAAATTGA 393718 36 100.0 30 .................................... AAAGCTTTTGCTTTTGCATTAAATTGATTA 393784 36 100.0 30 .................................... TAAAAGACTATGTGAAGTGGTTAATGAAGA 393850 36 100.0 30 .................................... CCTTAAAAACAAAGTGAACTAATGGAAACC 393916 36 100.0 30 .................................... AGAAGAAGAATTACGTTATCCTGATTTGAA 393982 36 100.0 29 .................................... CAGTGAACGCCATTACGGCACAATTGACC 394047 36 100.0 30 .................................... ATAATTGTTAAACCATTAGGACCAGTAACA 394113 36 100.0 29 .................................... GCAACTCCAGAAGTCATCCTAGAAACAAC 394178 36 100.0 30 .................................... TATTCACTTCTACATTTCCGCCAAACAAAG 394244 36 100.0 30 .................................... TAAGAAGCTAAACCAATAATATGAGCTGTA 394310 36 100.0 29 .................................... GATGTAGAAATACTTAGCGATAATGTACT 394375 36 100.0 30 .................................... GCCAATTCCGCAAAGAATGAAAACGGCAAG 394441 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================= ================== 44 36 99.8 31 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : AAATGCTTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAACAAGCTAAAATAGATTTGTTGCGTATTTATGAATATGGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACACCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTTGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATGCACTATCAAATCGCAAATAACCAAACCTCATACTGATTGGTTTGATTAAAGATTAGAAACCGAGGGACGAGGTTCAACGAAGTCAAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGT # Right flank : TAGCTAACAGCTTAGTTATTAAATATCAAAGCATTAAGCCGAAATATCGTTAAAAAAAATGCTTCTTTTTTGGCACGTTATACCAAGATTGAAGCATTTTTTTATTTCTAAAACAGTTCCAGTTGGGTGGGTTGTGGTGCTTTAGGGGTTTCTACTTTACCCCAAAAGTTTTGTATGTTCCCAAATTGCTTGTCTGTAATTCGTAACATACTTACTTTTCCTGAAGGAGGCAGGAGTTTGTGTACACGTTTTTCATGTACATCGGCACTTTCGCTACTGGCACAATGCCCGTATATATACCGAGTATTGCATCATACTAAAACCATCTTTCAAAAGTTGGTTCCGAAATCCAGAAGCATTTTTTCGGTCTTTCTTAGTCTCAGTAGGCAAATCAAAAAACACAAACAACCACATAATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTACGATCGCCCGAAAAACACTGTTGTAAGGAACTTGCCGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1679967-1680531 **** Predicted by CRISPRDetect 2.4 *** >NC_016510.2 Flavobacterium columnare ATCC 49512, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1679967 36 100.0 30 .................................... CGCTCTTTTATGTTTTCGTACTCCAAATTA 1680033 36 100.0 30 .................................... TCTTGGTGCTGCCTCCCAATCATCTGCGAA 1680099 36 100.0 30 .................................... TAGTTTTCTGTAATCTTCAGGCGTAATCTT 1680165 36 100.0 30 .................................... AAAGAAAACATCGTTTTTGTTCGCACGCAT 1680231 36 100.0 30 .................................... CTCATTTGTTTCTTTTTTATCTTTATTCAT 1680297 36 100.0 30 .................................... TCAATTTCATTTAATAAATCTCTACATTCT 1680363 36 100.0 30 .................................... ATTATAGATTGGCGGATTAGCCTTATGATA 1680429 36 97.2 30 ........................A........... ACTCAGATAGAGAGTAGTCGCGCAAAGAAA 1680495 36 77.8 0 ..........................GGA.G.GCGT | A [1680520] ========== ====== ====== ====== ==================================== ============================== ================== 9 36 97.2 30 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : GAGTACGCAAATACATCCAGCCGATTTTGAAAGAGAGGGCAATCCAAATTTTAAAAAATATTTAGCCCATTCTATTTTAGAAAACGAAGATGATCTTGATAAACTGCCAGAAAAAGTAGAAGCAATGAGGGAACTAGATGAAACCATTACTAATCCAATCATTAAAAAAGCGATTGTGTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCACCTAAATTTATTTACGATTTAGCGAATCGTTTTGTCCCAAAAAAAGAAGAAGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAAAAGAATTATGGGAAAACAAAGAGAAAAAAGATAAAACACAGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAAGTTCATTTTTTAGTATAAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAGCGTTTAG # Right flank : TTAAAAAATAGTCCAATGGACTATTTTAGCGAAGTAGCCAGGAGGCGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAATTCAACATCCAGTTTGTCACTCCTACGTAAGGAGGAGTCTCATAATCAATAGTATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTCAATTATTTAAAAAATAGATAAACCATAATTCTTATTCATAGAAATACCTGTTTTTTTAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCTGTATACTACCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGAATCATCAAACCATTTGGAAACATGAAGGCTAAATACATCAATCCGTTTACCGACTTTGGATTTAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //