Array 1 590435-590069 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADFW01000001.1 Paenibacillus larvae subsp. larvae DSM 25719 ERIC1_1c, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 590434 32 100.0 34 ................................ ACATCATCTGAAACACCCTCAGGAAACAATTCCT 590368 32 100.0 36 ................................ AACAATTACAAATATGCAACTGAAGCAGATGTAAAT 590300 32 100.0 37 ................................ CATCATCAAAATACAAACCGAATTGATTGCTATTCCC 590231 32 100.0 34 ................................ GGATAATTTCCGAAAGGTTATTTTGGTTTTCAAT 590165 32 100.0 32 ................................ CAATTAAGCCGACCGCCATATAGCGCGGCTAT 590101 32 84.4 0 ...............A..AGT..A........ | C [590073] ========== ====== ====== ====== ================================ ===================================== ================== 6 32 97.4 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : ATGCTAGTTTAACCATATTACATTTATTTTTTGAGGCATATTGACTAATAAATGAATAGGGAAGGTGATGGGAGGGCATTTGAATTGTGGAATTGGGTTTTCCATAGAGGTAAATATATGCCATGTTGGATATTTCTCGCGCTAGTAATGGAAGCTGATATGGGGTATTATGGAAGTGAAAAGGAGTGTACTTCTGTAATTGGACATTTGTAACTGACAAATGTTTTCATAAGCAGGTGATAGGGTAGATATTACGTCAATCGATATTAAGGCTAACGGGTGTAAAAGAAGTAATTGATTTGGAAGGTCTATTCATTTTCTAGTGCGAATGTATAGTGCACATGAAAATCCCGGGAGATTCGCACCATTATTTCACCAAAAATATACAAATATCTGGATATAGGTATATTTGATTGTAATAAATTTGAATCAAAAAATCATTGTTTGAATGATTTAATCAAAAAAATGTTCAATTTTGATTGTTTTGTTCAAATTTCGCT # Right flank : AAAAACTAGAGGCTTTGACCACTATCAACTGTGCCGTGCGATCGGACGGAACGACGCGAAAAGGCATCCTATTTTGTGAACTGCACCCTGTCAAGTAGACAGTACAAATAATAAAAATTAGTTAAGCGGCCTTGATCCTGAATTCCATCGGACTAAGGCCGTTTAATTTCGCTTGTAATCGCTCGTAATTGTAAAAGTAAATGTAAGCCTCAATGTCCCTTTCGAGATCTTCAAAGGTATGGTAAGTATGCAAATAATACTTCTCACATTTTAGGGCTCCCCAGAAGGATTCCATGGGGCCATTATCGATACATCTGCCAACTTGAGACATGCTCTGCATGATGTTTCCTTTCTCCAGGATCTTTTTGAATTTTTGCGAGGTATATTGAAAGCCCCGGTCACTATGCAGCATGGGCCTGCTGCCCGATGCCGCTTGTATCGCCTTGTTGACGGTTTGAAACACGAGGCCATTATTGTTGGAGTGCCCGAAAACGTAAGAC # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 593122-592682 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADFW01000001.1 Paenibacillus larvae subsp. larvae DSM 25719 ERIC1_1c, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 593121 32 100.0 37 ................................ TATGACCGGGTATCTGCTGTTGCAGAAGCCGAAGGGT 593052 32 96.9 36 ..................A............. ACGGTATGAATCGTAAGTCGCCTGACTCACGATATG 592984 32 100.0 36 ................................ CGTTCTGTGGCCAGTGTCATATGGCGACAGGCGAAT 592916 32 100.0 34 ................................ AAAAACCCCGATTATGTGGCGGCCGTCCGCACGC 592850 32 100.0 34 ................................ CATGAAGTAATTGCAGTTTCGAACAACGCTAAAG 592784 32 90.6 38 .........C.T.T.................. TATAGGTGTCACAATACCAGTCGTATCGTAAATTTCTA 592714 32 90.6 0 .............T......A..........C | A [592696] ========== ====== ====== ====== ================================ ====================================== ================== 7 32 96.9 36 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : GATTCAGAGGTTTTGGAGGTCTTATGAATGTTCCCAAAAAGCTTTTTTATATATTGCAATACCTAGTTCTTTTTATAAAAAAGCATTATCGACTTCATTTTTCAAAAAAAATGAGATTTTTCAGTGACGAATTTACTTATTACCTACTAACATTTGCAGAATGTTAAGCACATGCTTCACTTTGTCAGAAACTTTTTTTAAATGCGCGTTCCCTTTAACCATTTTTTGGTATCCACTATTCTTGAAATATGTTCTTCTTCTCCTTTTATTCATCTCCTACCTTTATAAAGTGAAGGAATTCAAAATCCTGCCTATTAGAACATGGATGCATAAAGTGTTTATTAAAGATGCGTTATTTGAGTTAAATGGAATCATCCTGATTCTAATCAACTTAGTCATATTATTAGAAATTAAGGTTTTAGCTATTCTCCTGTTGCTTTTTATTTCTCAGGCTTGGATGGGCTTTTTCCAGAGCGCGACGTGCGTCAATACGAGTCAAT # Right flank : TTCCGATAAATCCTACTCAAAATGCTCTTTTTGGTTGTATTTGATTTTACTTAAAATGGACCGGCCTTGCCTAAAATAGGTTGCTTCAGTTTTCTGTTTTATCTCAGATCGAGCCGGCCACTTATGCTAGAAAAACGTTTTCACCTGAAGGGAAATTTATCAATTCAACATAAATCTTGAAAGACCTAAGTAGGGGATAGGACATGGTCTACAAACTGTTTCACAAATTATTATTTTGGAAAGAAAAAAGCCGAATAATCAGTTCCCCACTTTTACAACTCAAAGAACAAACCCGTCATATCCTTTTATACCTACAGTTTGAATAGCAGTTGAATCTATATGTGACTCTTCATATAACAAATCAATAAATTGACGAACCTCATGCACATTTATGTCATCACTGTTATTCTCAATTACATCTTCATTGTGTACATTATCCCCAATAATTAATAACCGTACCTGGTCTGGAAAGCCAAGGGCCCATTTCAGATAGTAGGGGT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 514470-514698 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADFW01000002.1 Paenibacillus larvae subsp. larvae DSM 25719 ERIC1_2c, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 514470 30 100.0 36 .............................. TGGTGTGGGTGATTCCGTGTCCGTCCACCATTTGCC 514536 30 100.0 36 .............................. GGAAAAGTATCAGGCAGACGAATACCGAATCATTCC 514602 30 100.0 37 .............................. AGTTCTTCCATTTCCCAATACTCTTCCGTTTCCGTAT 514669 30 83.3 0 ......A........A....A.......CT | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 95.8 37 GTTTGATAGTAACACGAGGTGTATTGAAAC # Left flank : ACTCTTTTACTCATCGATGTAGCATATTGGATGTTAGCTCGTAACGTCTTGCCACGGCTGCTTTGTTTCTGGTTTCCAGAGCTTCCTTTACAACCTGTACCTTAAACTCGTTGGAATATTTCGTCCGTCTCATTTATCATCCTACCCTATTACTTGTAGTATAAACAAAACACACTTTTATTGTCCAAGTTCATTAGGGGGCTTTAGAACTAGCTTCTAAACATGGTAAATGCTAAGAGATGTATAGATTTTTATTAATTCCTTTTAAGAACTCATTACATATATTCAAAAATAAGTAGAAGAATAAAAAGCTTTATCTCTAATTTTCCCAACCTCTTTTACAGTGGTATTCGTCTTCAGCCTTAGAACCATAAGGATTTTTGCTCATTTAAGTTCATTTTATTTTAAGGTATATTTCGGTTGGGAAAATTTTGCGAAACCCCTGGTACTGTAGTAAAATGTGGACATACGGCTTTTGGAAAAGCTTGATTTTACTAGGG # Right flank : TTCGCAAGCTGTCTATCTCCACTTGGAGAGCACGGCTTGATAGTGCCATAAAAATAAATAGGCCATTCCCATTGGGACTGGCCTATTTTACTTACATTAATAGAGTAAATCTCTTTAAACAAATAAATAATGAAAATTTTATTTACAAATCAATTTTGTTTGGTATAATTTAGGGGGTTGATAATTAGAAGAACGTCCTACGTTACGGTTAGAGTTTAAGCAAATGAATAAATTTAAATGCGCCTTGCGCTAGGGTCCTCTTATTTTTTGATGTTTACTGTACTAGTGTACTATTTATTGGAATCCCTTTCAATACTAAAAATTTCTCAACAAAGGAGGTGAAAGAGATGTTTTACGAACTTAAAGCAACCGTGCTATTAAAACAAGAGGTCCATTACTTGCATGTACCGGAGCGAATTGGTTCCTGGATTAGCCGGGCGGCTCTAAATGATCCGGTATTAAAGCAGGAGCATTACTCGACAGGGTATAAGCACATTGTT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:0, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGATAGTAACACGAGGTGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 524249-524540 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADFW01000002.1 Paenibacillus larvae subsp. larvae DSM 25719 ERIC1_2c, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 524249 30 100.0 34 .............................. TATTGCCCGCCGCGTGGGCGTCGTACCTGCCCTT 524313 30 100.0 36 .............................. TGCAGTAGCGACAGTGTATTCAGCAGTTATAAGTAG 524379 30 100.0 36 .............................. TTCACACAGCCCTCCTCAAATTATCCGCCCTTTGGC 524445 30 100.0 36 .............................. TGGAGATGAAAGCACTTTGTGAACAAAAAGAATTGG 524511 30 96.7 0 ................A............. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 99.3 36 GTTTGACAGTAACACATGGTGTATTGAAAC # Left flank : ATTTATGCCATTTTTGGAGAAAGACCGGAGGTAGAAGGAATATGGCTAAAAATTATCATTACGTCATCCTTGTGTACGATATTGGTGAAAAACGGGTGGGCAAAGTATTCAAAATATGTAAGAGATACCTTGTTCACTTTCAGAAATCCGTATTTCGGGGCGAAATTACGCCCTCCAATTTACTGAAATTGAGAAACGATTTGAAGAAGGTTATAGATAAGGATAGCGACTTTATCGCTATTTTTAAAATGACGGGTGACTATGTATTTGATGAAGAAGTTATCGGTGTAAGATCGAACAATCAGGAGTCTTTACTCCTCTAATTTTCCCAACCTCTTTTGCACTATTACTTGGCTTCAGTCTTAGAACCATAAGGGACTTTCACTCATTTAGGTTCGTTTCCTTTTTAAATCCATTTCGGTTGGGAAAATTTTGCGAAACCCTTGGTACTGTAGTAAAATATGCACATATGGCTTTTGGAAAAGCTTGATTTTATTAGG # Right flank : CGGCTGTGGGTGAGCCTGTCAATCACATACTTTGGACTTCTGTTAATAGATTGGACACCTAAAACCGAGAGAATTATGCAGCTAAACAGATCATATGTTCGCATTGATTGGGCGTAAGATACCCGATAGAGGAATGGATTCTTTTTCCATTGTAAAAGCACGTAATGTACTCAAAAATCTTCTCCTTGGCTTCTTTCCTGGTTTTGAATTTGTGCAGGTAAACGAGTTCTTTTTTCAGCACGTTGTGGAACGATTCAATACAGGCGTTATCGTAGCAATTGCCCTTACGGCTCATGTTGCCCGTCATGCCGTATTGTCGTAGCTGCGTTTGATAGTCCGAGGACGCATACTGGCTACCGCGATCCGAATGATGCAACACGGTTCCTTTCGGCCGTTGATGGCGGTACGCCTGATCCAACGCCCTCAGGCAGAGCTCCCTGGTCATTCGCTCGCCCATGTGAAACCCGACGATCTTACGTGTGCACAGGTCTTCCAGACTG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACAGTAACACATGGTGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //