Array 1 303444-300722 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058910.1 Halosimplex rubrum strain R27 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 303443 30 100.0 35 .............................. CCGGCCATGAATTCCGCCGCGTCGTCCGCGTCGGA 303378 30 100.0 35 .............................. GCTCGGCAATCGACCCCCGACGCCGCACGAAGATT 303313 30 100.0 35 .............................. CCCCGCCAGGACCAGATTTGCCGGTATGGACCCTC 303248 30 100.0 36 .............................. GGTTACGGAACGGCGTCGTGGATGGGGTGAGACTGC 303182 30 100.0 38 .............................. TCGGTGTTCTGTGGCGTATACGGTCGATTCTCGACCGA 303114 30 100.0 37 .............................. CGGGGTCGGCCCCGGCGTCGGTCGTGGCGCCCTGGAG 303047 30 100.0 34 .............................. CCCGAGGCTCCCGCAGAGGCCAATCTGACGGTGG 302983 30 100.0 37 .............................. ATCTTCGGGAGGTATCGCCACTCGTTGTCGGGAACCG 302916 30 100.0 32 .............................. CGGTCTGATCGATAGGCGTACACACTGAGCAA 302854 30 100.0 35 .............................. AGCGGCAACTGGTCGATGTCGTCCAGGGCGCGCGG 302789 30 100.0 36 .............................. GACGCGGCGACGAACATGACGACCGTCGTCATCCGC 302723 30 100.0 35 .............................. AGTAACGCGCCAGAGATCCAGGGCTACCAGATCGA 302658 30 100.0 36 .............................. GAGCTTCGTTGCCTCCGTATCCAGTTGGGATCGGTT 302592 30 100.0 37 .............................. CGTTGGTTCGTTTCTGTATGTCCTCCGGGAAGCGAGA 302525 30 100.0 35 .............................. AGGTCCGCCTGCGTCCGAGCGAGAACCGACGTGAG 302460 30 100.0 37 .............................. TCGTGTCCGACCCGCAGGTGGCGGTGGTCCTGAGTCA 302393 30 100.0 35 .............................. GACCTCGACCCGGACGACATCATCAAGTACGCGAT 302328 30 100.0 34 .............................. CGGCGCTACTCATCCTGGGTACGGCCGCGATGTA 302264 30 100.0 37 .............................. GTCGCGAGCGCCGGCCTCATCACGATCGCGAGCAGCG 302197 30 100.0 36 .............................. TGGAACCGTCCGTTGCGGTCCTGGACGGTGATCGTG 302131 30 96.7 35 A............................. AGGAGTACGACGACCCAGCGAAGCGGGAGGCGGCT 302066 30 100.0 37 .............................. AGCCACGATACCACGTTTTACTGTTGGGAAGTGACTG 301999 30 100.0 38 .............................. GCAGAAGAGGCAGAGGCCGTCCTCGGGAACTACAACGT 301931 30 100.0 35 .............................. GAGATCGTCGTCAGAGTCCTCAACGGTCGGCGGTC 301866 30 100.0 35 .............................. AGTCCGCACTGGCATATCATCGGAGTCGCGCCCTA 301801 30 100.0 36 .............................. TGTCGGATGCTCTTGGACCGAAGCGCGTACCGAGAC 301735 30 100.0 35 .............................. GGGATTGTAGCGGCGTCGGTGGCGGTGTTGTCGGT 301670 30 100.0 35 .............................. CGTATGAACTATCTGAAACAATCCTATCGGCGGTT 301605 30 100.0 35 .............................. TGGATTAGATCCTTGAGTACATCCGCGACTAACAC 301540 30 100.0 35 .............................. TCCGGTCGAGGCGTCCGGTCCGGCTCGTACATCTG 301475 30 100.0 36 .............................. TGGCTCCGCTCGGGGCGGCCGTAGTGGGCCACCACC 301409 30 100.0 36 .............................. TCGGCTCTGACGCCCTCCTGGCCGGTTTTGTAGGTG 301343 30 100.0 35 .............................. TGCGGGATACAAAGGGGTGGTGGTGATATGTCCAG 301278 30 100.0 37 .............................. GGTCAATGCGGCCAATAGTGTCTACCCGAATGTGAGT 301211 30 100.0 36 .............................. CAGGAGGCGGTCAAGGACGGCCACCCCGACCAGGGT 301145 30 100.0 34 .............................. ATCGTCTACGAACTGCTGAACGACACTCGCGGCG 301081 30 100.0 35 .............................. CACTTCGCGCGGGTGTCCGCGAGCTTCTCAATCTG 301016 30 100.0 35 .............................. CCGCCACTCAACGGCCACGAGGAACAGACGAGAAC 300951 30 100.0 37 .............................. TGCCGAACCGTCAGCAGCGAGAGGTCGTGGATCGCGT 300884 30 100.0 36 .............................. ATCCGAAGTATATCATGTCCCTCTCACCCACGACCG 300818 30 100.0 38 .............................. CTGCTGTGCGGCGACCTCGCTCGTGCCGTCTTCGACGA 300750 29 96.7 0 .................-............ | ========== ====== ====== ====== ============================== ====================================== ================== 42 30 99.8 36 GTTCCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : GTCGCGACGAACGGCGACCTCCCGACCGCGCTCTCGGCGAACCCCGGCGCCTGGTACCGTCCCGACAGCGACCACTACGCCTTCGCCGTCCGGACGCCCGACGGGACCGTCTACCGGAAGACCGCCGACGGCGCCGCCAGTGCGATCGAGCGCTATCGCGACTGAGTCCCGCCGGACTCTCCCGCCGAGTGGTGTGAACGTCACTCCTCGCTTGCCCTCCCGCGCTGGCGATACGGGGCCGATCCCTCGGTGTGGACGCGAGGAACGCCGCCGGCGCGTCCCCGTCACCGCGTTCGGGCCGACGACCGTAGCGCTTCTATCGAGCGTTCCCGCGACCCGCGAGTGATCGCCGCCGAGTACAGCGCGGCCGCTCGGGATCGACCCGTTCCCACGCGACTCGGCCGTCGACCCCCGGGGGGTCAGCGGGGTATCGAGGGTCGACGGAAACGATGAAGTGAGAACGGTTCCATAACACGCGTGAGGCCGGTGAACCGGCCATG # Right flank : ACGCACTAAAGCCGGAGGATCCCAGGCGCTGGGATCTCAGAGTTTGCAGACTCTCTGAGGGTGAGCGTGTGTCAACCGTGGTGAGTTACACTGTCCGCGTCAGTAACCTATTAGGCGCCGCTCTCGGACGACCCGTTTATGGTCGATATCGCGTTCGTCGGCGCAGGAAGCATCATCTTCGCGAAGAACCTGATGACGGATATCCTCTCGTTCGAGGAGCTGCAGGACAGCACGATCACGCTGATGGACATCGACGAGCGACGGCTCGACCGGACGGCTGCCGTCGGCGAGGCGATCGTCGAGGAACACGACCTCCCCGCCGAGATCCACACGACGACCGACCGGCGGGCGGCGCTGGACGGCGCCGACTACGTGCTGAACATGGTCAACGTCGGCGGCGAGGAACCGTTCGAGAACGAGGTCCGGATCCCGCAGGAACACGGGGTGAACCAGGCCGTCGGTGACACGCTCGGCCCCGGCGGCGTCTTCCGGGCGCTCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1969753-1970435 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058910.1 Halosimplex rubrum strain R27 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1969753 30 100.0 35 .............................. CCGACCCGGTCGAGAGCGTCGCGCCGGGCCGACTG 1969818 30 100.0 36 .............................. AAAGCGGCAGAGCCTCGCAGACGCCGGGTTTGAGGG 1969884 30 100.0 38 .............................. GTACCGCCCTCCTTGAACGCGACGTAAAGCGGGTCGTC 1969952 30 100.0 34 .............................. CCCTGCTCGTCGGTGTGTTCGGTCTCGCCGGTCG 1970016 30 100.0 34 .............................. ATGTCGATGTTCGTCGGTGACACCGACAATGGTA 1970080 30 100.0 34 .............................. CTCTAACTCGGATTCCTCGGTATCGATGAACCAC 1970144 30 100.0 36 .............................. GTCCCGCGGGGGTGGACGCAGTCGTACCAGTCCGCC 1970210 30 100.0 35 .............................. AACTGGGGTCCGAATCAAGAAGCGTGCGGGCCGTG 1970275 30 100.0 35 .............................. GCCATCGCGGGCGGCGGCAAGCGCGCGGGCGAACA 1970340 30 100.0 36 .............................. ACTACGGCGACCACGAGGACGCGAAGCTCGCCGGCT 1970406 30 83.3 0 ...................AA...C...AA | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 98.5 35 GTTCCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : GACGCTCGAACGGACCGTCGAGCATCCGGAGCTGAACCGAAAAGTGAGTTACCAGTACCTCCTGCGGCTGGAGGCGTACAAGTTGAAGAAACATCTGCTCGCCGGAGAGGCCTACGAGCCGTTCCGACGGTGGTGGTGACGTGTACGTCGTCCTCGTCTACGATATGGAGGCCGACCGCACCCAGCGGATGCTGAGACTCTGTCGTCGGTATCTCACCCACGTTCAAAACTCCGTCCTCGAGGGGGAAATCTCCGAAGGCGACCTGGCAACACTCCGCGGCGAGATCGAAGACACCCTGATAGCTGGCGAATCCGTCATCGTCTACGAACTCTCGTCGGACACACTCCTCGACCGCACCGTCTACGGTGACGACCCGACCGAGGACAGCCGCTTCCTCTGAGCCGTCGACCCCCCGGGGGGTAGCGGGGTATCGATGGTCGACGGAAACACTGAACTGTGAACGGCCCATAGACCCACTTAGTGCCCGGTTTCGGGCATG # Right flank : ATCACCCAGGAAGGGACAGGTCTAGAGTATCCAGCCCGTGTCCGTCGTTCGATTTACTGCGTTCACGGGATCGGACCTCTCGTCCCATCCGAGCGAGCAGCTATGAACGCACAGTAGCATCTCACCGGTCGATCCTGCAAGAAGTGGGTTGGGGCGGATTTGAACCGCCGGCCTCCTCCATGTCAAGGAGGTGTCATAACCAACCTAGACCACCAACCCGCGCTTGCCTGCTACACTCTCGAATTGAGGACAGGGATAATTGAAGGTTTCGAAGACGGCCCGCGAGCAGGGGTCGATCCGCGGGAGGGCACCCGAGTCCCGCCGGTAGTCGAACCGAGCGCGGACGACCGGGTCCAGCCGGGTGGGAGCGACCTCGGCACGGCCCTCAGAACGAGAAGTCGTCGTCCTCTTCGCGCATCCCCGGGTCCTCGGCGGTGTCCCACATGTCGTCGGCGAACTCGTCGGCCATGTCCGTCTCGGCGACCTCCTCGCCGGTGTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //